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Report for Sequence Feature Glyma03g42230

Feature Type:gene_model
Chromosome:Gm03
Start:47489789
stop:47491013
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g42230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01410AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:578308-578991 FORWARD LENGTH=227 SoyBaseE_val: 1.00E-71ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_I1JS44UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JS44_SOYBN SoyBaseE_val: 4.00E-140ISS
UniRef100_Q2HTB8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Harpin-induced 1 n=1 Tax=Medicago truncatula RepID=Q2HTB8_MEDTR SoyBaseE_val: 2.00E-99ISS

Expression Patterns of Glyma03g42230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g42230
ParalogEvidenceComments
Glyma19g44980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g42230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g261400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g42230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g42230
>Glyma03g42230.1   sequence type=CDS   gene model=Glyma03g42230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAAGGACAAAGTTTCCGGTGATCCAAGACGCGCAGTGTGCACAGGCATCACCATCTTCCTCCTCTTAGCCGGCGTCACTCTCCTAGTCCTCTGGCTGGTCTACCGTCCCCACAAGCCGCGCTTCACAGTAATCGGCGCCGCCGTCTACGACCTAAACACCACCACCCCACCGCTGATGTCGACCACCGTGCAGTTCTCCGTCCTCATAAAGAACCCGAACAGGCGTGTCTCCATTTACTACGACAGGTTCTCCGCCTTTGTCTCGTACAGGAACCAGGCCATAACGCCGCAGGTTCTGCTGCCGCCTCTGCACCAGGAGAAGCGAAGCTCGGTGTCGGTGTCGCCGGTGATGGGAGGCACGGCGCTTCCGGTGTCGGTGGAGGTGTCTGACGGGCTGGCGGTGGACGAGGCTTATGGGTTGGTGGGTCTGAGGCTGATATTTGAGGGCAGAGTGAGGTGGAAGGCCGGGGCCATCAAAACTGCGCACTATGGACTGTACGTTAAGTGCGATGTTTTGATGGGTTTGAAGAAAGGGTTGGTGGGTCAAGTTCCTCTCCTGGGAGTTACACCCTGCCATGTCCATCTATGA
Predicted protein sequences of Glyma03g42230
>Glyma03g42230.1   sequence type=predicted peptide   gene model=Glyma03g42230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKDKVSGDPRRAVCTGITIFLLLAGVTLLVLWLVYRPHKPRFTVIGAAVYDLNTTTPPLMSTTVQFSVLIKNPNRRVSIYYDRFSAFVSYRNQAITPQVLLPPLHQEKRSSVSVSPVMGGTALPVSVEVSDGLAVDEAYGLVGLRLIFEGRVRWKAGAIKTAHYGLYVKCDVLMGLKKGLVGQVPLLGVTPCHVHL*






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