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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24470 | AT | Annotation by Michelle Graham. TAIR10: pseudo-response regulator 5 | chr5:8356204-8358873 REVERSE LENGTH=667 | SoyBase | E_val: 7.00E-76 | ISS |
| GO:0000160 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0009639 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red or far red light | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0010114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red light | SoyBase | N/A | ISS |
| GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
| GO:0042752 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048574 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0051170 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear import | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000156 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| PTHR26402 | Panther | RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM | JGI | ISS | |
| PF00072 | PFAM | Response regulator receiver domain | JGI | ISS | |
| PF06203 | PFAM | CCT motif | JGI | ISS | |
| UniRef100_Q2HTB9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Response regulator receiver; CCT n=1 Tax=Medicago truncatula RepID=Q2HTB9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023379C5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023379C5 related cluster n=1 Tax=unknown RepID=UPI00023379C5 | SoyBase | E_val: 0 | ISS |
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Glyma03g42221 not represented in the dataset |
Glyma03g42221 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g44970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g261300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g42221.2 sequence type=transcript gene model=Glyma03g42221 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTCGCGGTTGAAGGCCGTTTCAAAATTGCGAAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCTCCACTCAATTCAGCCAACTTTTCAGATATTTTCACTGCTCAACTTAAGACTAAGCATGAGCCGCAACTTGTTTGAAAATGGGTCTAGTGGCGGCTGACAAGGGTTCGATGCAGACCCAAGAGGAACAGAGCGACAATGCCTCCGCTGTTCAGTGGGAACGCTTTCTGCCTCGGATGGTGCTTCGGGTCTTGCTTGTCGAAGCTGATGATTCTACTCGACAGATCATTTCTGCACTTCTCCATAAATGCAGTTACAAAGTTGTCGCATTTTGTGACGGCTTAAAGGCATGGGAGACATTGAAGAACAAACCATCTGACATAGATCTCATATTAACAGAAGTGGATTTGCCATCAATATCTGGATTCTCACTTCTTACTTTAATCATGGAGCATGACATTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCATGATTCCGTTAGCATGGTACTCAAATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAGGAATGAGCTAAGAAACTTGTGGCAGCATGTATGGAGAAGGCACGCCATAAGCAGGCCTCCTCAAAATTTTACACTACCAGAGATTGAAATTGGTTTTGCTGCAGAAAACCATGCTGCAAGCAATGACTCTAGTGGTTCTGTGGCTTCTACAGCAAAAAATGGTGAATGCAGCGAGAAAACAAGTGAGGCTCAAGATATATCGCAGCTGAAGAGGTCTTCAAATTTGAGCAATATTGACACGGTGAAGCATGAAAATTCTACCAAATGTGAAAGGGAATCAGATAAGCATAATGATGAAGCTGGAGAGAAATCACTGTTTGTATCAGAAGATTCAAGGTGCAACAAAACTTTTAAACCAACAGGTTTAAGGCTAGGTCAAGGCTATGAATGCTGTGAAACGAGAAATCAAGATGTAGTTCTAAAAATAGAGTTGATCAAATCCAATCCTGAAATTAATACAGATATTCATGGATGCAGTGATGAACTGGTAGATCCTTATACTGGGGCCATTGACTTGATTGCTACATTCAAGAATCTTCCAAAGAGCACTGATGAAAAATGTAGTTTCAGTAGTGGTAACACTGCCAAGTTTGATTTTGATACACAATTGGAACTTTCTTTAAGAAGAAGAGATTTTCCTGGAAGCTCATGTAAAGCTGCATCTGAGGAAAGGCAATTATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATAGTAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAACACCATCAACTATCTCTGCTAAATTAACAAATTCCAGTCTGAGTTCTCATGAATCCCATAAATTCTCAGAAAATGCATCTACTTCTCATCAATATGGTGGAAAAAATCAAAATCAGGAGAAAATTATCACTCCAGTCATTGGTCAGTCTGGACAAGTTGATCCAAAATTACCAAACAGTCAACTTGGATATTTTCCTGCTACAGGGGTTACTTCTGATCACAAGTCTACAGGAAATGGAAATGTCTTCCCTTCTATGCTTTATGCAGAATCAGGTGTCCATCCCATATGGACTCCAAAATCAGTGTGCCAGAAAGAAAGTTCTCCATTTCCCACAATCACTTCATCCCAGTCCAATCCTCAAAGTCACAACTCAGAATGTCATCTCTGGTCGGAAGATTCAACCCATGCTTCTGATAAAAATTTAAATGATCAAATTAATTTGGATTGTGAGACACATGACTCTCCTGATGCTAGTCAGAGTGCTGGTACTAGTTTTTTCCACGACACAGCAAATCATAATAGTAGCGGTGTATACAGAAGCATGGGCTGCAGAAGTGATGGAAATGCTACTTCAGCTAAGGTAGCCAAGGAGAGCCATGGAAGTTTTATTGATAGTGGTCACTGCAGTTATGATGGATTCATAGGGACAGATTCTCATCGCACAAGCCACCGAGAAGCAGCTCTGACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCCCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACAAGATGATCATCCAGTAGCAGATGTGGGTGGTGGTTCCTGAAATTGTTTTGTTTCAAGTTACCTTCATCATTGAATTACAGTCTGACTTCCAAATCTGATTTGCCTTTCTCGACAAGGATTAACTGTAGGGTCTAGTTTGTCTGGTGAAATTATGTTTCCTCTTAGCGTTGTTAGTATTTTCTTCTGGCTTGTTATATTGGCTGTTTCTTAGAATGTAGGATTGTAAGTATTTTGTAGGTTTGTTTTGAAGTTTTGATTTTACCTCGTGTATATGCTTTCTTGATTGAATACTAATATAGGGCTACTATCGTTATATAGGCAGTATGCTTGTGTCTTGAAAGATTGAATTTTTATTTTTTTTTATCTCGGCAAGCATCTCTGGTTTGCAAGCAAACGATCTTTTTTTAATCTTTACATTGATCATTTGAGCATCCTTTTAGTTGCACTATCCAGAGAATCTAGTTAACATCAGTGTATTGGCAATATGTATGAGATTCGCAGTAGTCACTACTTAAGACTCCTGGAACATTGCACGTTGAAACTATTGGCCTCTGAAGTTCCCTTATGATTTGTAAAAGTACTTGTATGTTATGGGGTCATGGTCCCCCCTGACCGTTCATGTACTTCACTTTTCTTTTTCCT
>Glyma03g42221.1 sequence type=CDS gene model=Glyma03g42221 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCTAGTGGCGGCTGACAAGGGTTCGATGCAGACCCAAGAGGAACAGAGCGACAATGCCTCCGCTGTTCAGTGGGAACGCTTTCTGCCTCGGATGGTGCTTCGGGTCTTGCTTGTCGAAGCTGATGATTCTACTCGACAGATCATTTCTGCACTTCTCCATAAATGCAGTTACAAAGTTGTCGCATTTTGTGACGGCTTAAAGGCATGGGAGACATTGAAGAACAAACCATCTGACATAGATCTCATATTAACAGAAGTGGATTTGCCATCAATATCTGGATTCTCACTTCTTACTTTAATCATGGAGCATGACATTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCATGATTCCGTTAGCATGGTACTCAAATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAGGAATGAGCTAAGAAACTTGTGGCAGCATGTATGGAGAAGGCACGCCATAAGCAGGCCTCCTCAAAATTTTACACTACCAGAGATTGAAATTGGTTTTGCTGCAGAAAACCATGCTGCAAGCAATGACTCTAGTGGTTCTGTGGCTTCTACAGCAAAAAATGGTGAATGCAGCGAGAAAACAAGTGAGGCTCAAAGCACTTGTACATCGCCATTTTTGGAAGCTGAGAGTACATACTTGGAAAATATGCAGGATATATCGCAGCTGAAGAGGTCTTCAAATTTGAGCAATATTGACACGGTGAAGCATGAAAATTCTACCAAATGTGAAAGGGAATCAGATAAGCATAATGATGAAGCTGGAGAGAAATCACTGTTTGTATCAGAAGATTCAAGGTGCAACAAAACTTTTAAACCAACAGGTTTAAGGCTAGGTCAAGGCTATGAATGCTGTGAAACGAGAAATCAAGATGTAGTTCTAAAAATAGAGTTGATCAAATCCAATCCTGAAATTAATACAGATATTCATGGATGCAGTGATGAACTGGTAGATCCTTATACTGGGGCCATTGACTTGATTGCTACATTCAAGAATCTTCCAAAGAGCACTGATGAAAAATGTAGTTTCAGTAGTGGTAACACTGCCAAGTTTGATTTTGATACACAATTGGAACTTTCTTTAAGAAGAAGAGATTTTCCTGGAAGCTCATGTAAAGCTGCATCTGAGGAAAGGCAATTATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATAGTAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAACACCATCAACTATCTCTGCTAAATTAACAAATTCCAGTCTGAGTTCTCATGAATCCCATAAATTCTCAGAAAATGCATCTACTTCTCATCAATATGGTGGAAAAAATCAAAATCAGGAGAAAATTATCACTCCAGTCATTGGTCAGTCTGGACAAGTTGATCCAAAATTACCAAACAGTCAACTTGGATATTTTCCTGCTACAGGGGTTACTTCTGATCACAAGTCTACAGGAAATGGAAATGTCTTCCCTTCTATGCTTTATGCAGAATCAGGTGTCCATCCCATATGGACTCCAAAATCAGTGTGCCAGAAAGAAAGTTCTCCATTTCCCACAATCACTTCATCCCAGTCCAATCCTCAAAGTCACAACTCAGAATGTCATCTCTGGTCGGAAGATTCAACCCATGCTTCTGATAAAAATTTAAATGATCAAATTAATTTGGATTGTGAGACACATGACTCTCCTGATGCTAGTCAGAGTGCTGGTACTAGTTTTTTCCACGACACAGCAAATCATAATAGTAGCGGTGTATACAGAAGCATGGGCTGCAGAAGTGATGGAAATGCTACTTCAGCTAAGGTAGCCAAGGAGAGCCATGGAAGTTTTATTGATAGTGGTCACTGCAGTTATGATGGATTCATAGGGACAGATTCTCATCGCACAAGCCACCGAGAAGCAGCTCTGACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCCCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACAAGATGATCATCCAGTAGCAGATGTGGGTGGTGGTTCCTGA >Glyma03g42221.2 sequence type=CDS gene model=Glyma03g42221 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTCTAGTGGCGGCTGACAAGGGTTCGATGCAGACCCAAGAGGAACAGAGCGACAATGCCTCCGCTGTTCAGTGGGAACGCTTTCTGCCTCGGATGGTGCTTCGGGTCTTGCTTGTCGAAGCTGATGATTCTACTCGACAGATCATTTCTGCACTTCTCCATAAATGCAGTTACAAAGTTGTCGCATTTTGTGACGGCTTAAAGGCATGGGAGACATTGAAGAACAAACCATCTGACATAGATCTCATATTAACAGAAGTGGATTTGCCATCAATATCTGGATTCTCACTTCTTACTTTAATCATGGAGCATGACATTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCATGATTCCGTTAGCATGGTACTCAAATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAGGAATGAGCTAAGAAACTTGTGGCAGCATGTATGGAGAAGGCACGCCATAAGCAGGCCTCCTCAAAATTTTACACTACCAGAGATTGAAATTGGTTTTGCTGCAGAAAACCATGCTGCAAGCAATGACTCTAGTGGTTCTGTGGCTTCTACAGCAAAAAATGGTGAATGCAGCGAGAAAACAAGTGAGGCTCAAGATATATCGCAGCTGAAGAGGTCTTCAAATTTGAGCAATATTGACACGGTGAAGCATGAAAATTCTACCAAATGTGAAAGGGAATCAGATAAGCATAATGATGAAGCTGGAGAGAAATCACTGTTTGTATCAGAAGATTCAAGGTGCAACAAAACTTTTAAACCAACAGGTTTAAGGCTAGGTCAAGGCTATGAATGCTGTGAAACGAGAAATCAAGATGTAGTTCTAAAAATAGAGTTGATCAAATCCAATCCTGAAATTAATACAGATATTCATGGATGCAGTGATGAACTGGTAGATCCTTATACTGGGGCCATTGACTTGATTGCTACATTCAAGAATCTTCCAAAGAGCACTGATGAAAAATGTAGTTTCAGTAGTGGTAACACTGCCAAGTTTGATTTTGATACACAATTGGAACTTTCTTTAAGAAGAAGAGATTTTCCTGGAAGCTCATGTAAAGCTGCATCTGAGGAAAGGCAATTATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATAGTAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAACACCATCAACTATCTCTGCTAAATTAACAAATTCCAGTCTGAGTTCTCATGAATCCCATAAATTCTCAGAAAATGCATCTACTTCTCATCAATATGGTGGAAAAAATCAAAATCAGGAGAAAATTATCACTCCAGTCATTGGTCAGTCTGGACAAGTTGATCCAAAATTACCAAACAGTCAACTTGGATATTTTCCTGCTACAGGGGTTACTTCTGATCACAAGTCTACAGGAAATGGAAATGTCTTCCCTTCTATGCTTTATGCAGAATCAGGTGTCCATCCCATATGGACTCCAAAATCAGTGTGCCAGAAAGAAAGTTCTCCATTTCCCACAATCACTTCATCCCAGTCCAATCCTCAAAGTCACAACTCAGAATGTCATCTCTGGTCGGAAGATTCAACCCATGCTTCTGATAAAAATTTAAATGATCAAATTAATTTGGATTGTGAGACACATGACTCTCCTGATGCTAGTCAGAGTGCTGGTACTAGTTTTTTCCACGACACAGCAAATCATAATAGTAGCGGTGTATACAGAAGCATGGGCTGCAGAAGTGATGGAAATGCTACTTCAGCTAAGGTAGCCAAGGAGAGCCATGGAAGTTTTATTGATAGTGGTCACTGCAGTTATGATGGATTCATAGGGACAGATTCTCATCGCACAAGCCACCGAGAAGCAGCTCTGACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCCCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACAAGATGATCATCCAGTAGCAGATGTGGGTGGTGGTTCCTGA
>Glyma03g42221.1 sequence type=predicted peptide gene model=Glyma03g42221 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLVAADKGSMQTQEEQSDNASAVQWERFLPRMVLRVLLVEADDSTRQIISALLHKCSYKVVAFCDGLKAWETLKNKPSDIDLILTEVDLPSISGFSLLTLIMEHDICKNIPVIMMSSHDSVSMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHAISRPPQNFTLPEIEIGFAAENHAASNDSSGSVASTAKNGECSEKTSEAQSTCTSPFLEAESTYLENMQDISQLKRSSNLSNIDTVKHENSTKCERESDKHNDEAGEKSLFVSEDSRCNKTFKPTGLRLGQGYECCETRNQDVVLKIELIKSNPEINTDIHGCSDELVDPYTGAIDLIATFKNLPKSTDEKCSFSSGNTAKFDFDTQLELSLRRRDFPGSSCKAASEERQLLNHSNASAFSRYSSSKLLQPLFPTPSTISAKLTNSSLSSHESHKFSENASTSHQYGGKNQNQEKIITPVIGQSGQVDPKLPNSQLGYFPATGVTSDHKSTGNGNVFPSMLYAESGVHPIWTPKSVCQKESSPFPTITSSQSNPQSHNSECHLWSEDSTHASDKNLNDQINLDCETHDSPDASQSAGTSFFHDTANHNSSGVYRSMGCRSDGNATSAKVAKESHGSFIDSGHCSYDGFIGTDSHRTSHREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVQDDHPVADVGGGS* >Glyma03g42221.2 sequence type=predicted peptide gene model=Glyma03g42221 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLVAADKGSMQTQEEQSDNASAVQWERFLPRMVLRVLLVEADDSTRQIISALLHKCSYKVVAFCDGLKAWETLKNKPSDIDLILTEVDLPSISGFSLLTLIMEHDICKNIPVIMMSSHDSVSMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHAISRPPQNFTLPEIEIGFAAENHAASNDSSGSVASTAKNGECSEKTSEAQDISQLKRSSNLSNIDTVKHENSTKCERESDKHNDEAGEKSLFVSEDSRCNKTFKPTGLRLGQGYECCETRNQDVVLKIELIKSNPEINTDIHGCSDELVDPYTGAIDLIATFKNLPKSTDEKCSFSSGNTAKFDFDTQLELSLRRRDFPGSSCKAASEERQLLNHSNASAFSRYSSSKLLQPLFPTPSTISAKLTNSSLSSHESHKFSENASTSHQYGGKNQNQEKIITPVIGQSGQVDPKLPNSQLGYFPATGVTSDHKSTGNGNVFPSMLYAESGVHPIWTPKSVCQKESSPFPTITSSQSNPQSHNSECHLWSEDSTHASDKNLNDQINLDCETHDSPDASQSAGTSFFHDTANHNSSGVYRSMGCRSDGNATSAKVAKESHGSFIDSGHCSYDGFIGTDSHRTSHREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVQDDHPVADVGGGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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