Glyma03g42200 - SoyBase

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Report for Sequence Feature Glyma03g42200

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47471265
stop:	47476310
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g42200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01400	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167); Has 465 Blast hits to 425 proteins in 199 species: Archae - 0; Bacteria - 3; Metazoa - 153; Fungi - 166; Plants - 45; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). \| chr4:573098-575648 REVERSE LENGTH=738	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0412	KOG	Golgi transport complex COD1 protein	JGI		ISS
PTHR24016	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24016:SF19	Panther		JGI		ISS
PF04437	PFAM	RINT-1 / TIP-1 family	JGI		ISS
PF08318	PFAM	COG4 transport protein	JGI		ISS
UniRef100_D7M4W3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M4W3_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1JS41	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JS41_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g42200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g42200

Paralog	Evidence	Comments
Glyma19g44940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g42200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g261100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g42200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g42200

Limit To All Plant Sequences

>Glyma03g42200.1   sequence type=CDS   gene model=Glyma03g42200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGTGCTATTCCAGAGGCCAACGGAAATGTCGCCGACGAAGAAAACGGGAGCAGCGTTGGTGGATCCATCGATTTCGGCACGGCGGAGGCCGTTCAATACGTCCGTTCCCTCACCGACGTTGGCGCCATGACGCGCCTCCTTCACGAATGCATCGCTCACCAGAGAGCGGTGGACGTTGAACTCGACGAGCTTCTGTCGCAGCGCACCGACCTCGACCGCCATCTCCTCCAGCTCCAGCGCTCCTCTGACGTCCTCGACATCGTCAACTCCGACGCAGACTATATGCTCTCCAACGTCGCCTCCACCTCCGACCTCGCCGACCAGGTCAGCCGCAAGGTCCGCGAGCTTGACCTCGCCCAGTCGCGCGTCCGCAACACGCTCCTCCGCATCGACGCCATCGTGGAACGCGCCAACTCCCTCGAAGGCGTCCACCGCGCCCTCGAGGCCGAGGACTACGAATCCGCCGCCTGCTACGTCCAGACCTTCCTCCAGATCGACGCCCAGTACAAGGATTCCGGCTCCGATCAGCTTCAGAGGGATCGCTTGTTGGCCGCCAAGAAGCAGTTGGAAGGAATTGTAAGGAAGAAGCTCTCCGCCGCCGTCGATCAGCGCGACCACCCCGCCATTCTCAGGTTCATTCGGCTCTTCACACCGCTGGGTGTGGAGGAGGAGGGTTTGCAGGTGTATGTTGGCTACTTGAAGAAGGTGATTGCGATGAGGTCGAGGATGGAGTTTGAGCAGTTGGTTGAGATGATGGATCAGCAGAATGTGAATTTTGTTGGGTGTTTGACCAATTTGTTTAAGGACATTGTGTTGGCGATTGAGGAGAATAGTGAGATCTTGAGTGGTCTTTGTGGGGAGGATGGTATTGTGTATGCCATCTGTGAGCTTCAGGAGGAGTGTGATTCTCGCGGTTCTGTGATTTTGAACAAGTATATGGAGTATAGGCAGTTGGCTAAGTTGTCCTCTGAGATAAATGCACACAACACCAATTTGCTTGCTGTTGGAGGAGGTCCTGAGGGTCCTGATCCACGGGAGGTTGAGTTGTATTTGGAAGAGATTCTCAACCTTATGCAGCTTGGTGAGGATTACACTGAGTTCATGATTTCCAAGATCAAAGCACTTACTTCTGTTGACCCCGAATTGCTCCCTCGCGCCACCAAGGCTTTCCGGAGTGGCAGTTTCAGCAAGGTGGCGCAGGATTTAACAGGCTTTTATGTCATTTTGGAGGGATTTTTCATGGTGGAGAATGTTAGGAAGGCGATAAAGATCGATGAACAGGTGCCTGACAGCCTTACCACTTCTATGGTGGATGATGTGTTTTATGTATTGCAAAGTTGCCTGCGGAGGGCTATATCCACTTCCAATATCAGTTCTGTTGTCGCAGTTTTGAGTGGTGCTAGTAGTTTGCTTGGTAATGAATATCATGAAGCCTTGCAGCACAAAACTAGAGAGCCAAACCTTGGTGCAAAGTTGTTCTTTGGTGGTGTTGGCGTGCAAAAGACGGGGACAGAAATTGCAACAGCTTTGAATAATATGGATGTTAGCAGTGAATATGTTCTGAAGCTAAAACATGAAATTGAAGAACAGTGTGCTGAGGTATTTCCTGCACCGGCTGATCGAGAAAAGGTAAAATCTTGTTTGACTGAGTTGGCAGATAGCAGCAATGCTTTCAAGCAAGCTTTGAATGCTGGCATAGAACAACTTGTGGCAACCATCACACCTCGCATAAGACCGTTATTAGACAGTGTAGGAACAATCAGCTATGAGCTTTCAGAGGCTGAGTATGCAGATAATGAGGTGAATGACCCATGGGTTCAGAGACTTCTCCATGCCGTTGAGTCAAATGTGGCATGGCTGCAGCCACTAATGACTGCTAACAATTATGACACGTTTGTTCATTTGATTATTGACTTCATTGTGAAAAGGCTAGAAGTCATTATGATGCAGAAAAGATTTAGTCAGCTAGGTGGTCTTCAGCTTGACCGAGATGCTAGAGCTTTGGTAAGCCATTTCAGTGCCATGACACAGAGAACTGTTAGAGACAAGTTTGCACGTCTTACTCAAATGGCAACAATTCTAAATTTAGAAAAGGTTTCTGAGATTCTAGATTTCTGGGGTGAAAACTCTGGACCTATGACCTGGAGATTAACTCCAGCAGAGGTTAGGCGTGTATTGGGTCTGCGAGTTGATTTTAAATCAGAAGCAATAGCTGCTCTGAAGTTGTAA

Predicted protein sequences of Glyma03g42200

Limit To All Plant Sequences

>Glyma03g42200.1   sequence type=predicted peptide   gene model=Glyma03g42200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGAIPEANGNVADEENGSSVGGSIDFGTAEAVQYVRSLTDVGAMTRLLHECIAHQRAVDVELDELLSQRTDLDRHLLQLQRSSDVLDIVNSDADYMLSNVASTSDLADQVSRKVRELDLAQSRVRNTLLRIDAIVERANSLEGVHRALEAEDYESAACYVQTFLQIDAQYKDSGSDQLQRDRLLAAKKQLEGIVRKKLSAAVDQRDHPAILRFIRLFTPLGVEEEGLQVYVGYLKKVIAMRSRMEFEQLVEMMDQQNVNFVGCLTNLFKDIVLAIEENSEILSGLCGEDGIVYAICELQEECDSRGSVILNKYMEYRQLAKLSSEINAHNTNLLAVGGGPEGPDPREVELYLEEILNLMQLGEDYTEFMISKIKALTSVDPELLPRATKAFRSGSFSKVAQDLTGFYVILEGFFMVENVRKAIKIDEQVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVVAVLSGASSLLGNEYHEALQHKTREPNLGAKLFFGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPAPADREKVKSCLTELADSSNAFKQALNAGIEQLVATITPRIRPLLDSVGTISYELSEAEYADNEVNDPWVQRLLHAVESNVAWLQPLMTANNYDTFVHLIIDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSHFSAMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKSEAIAALKL*

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