Glyma03g42040 - SoyBase

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Report for Sequence Feature Glyma03g42040

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47354906
stop:	47357044
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g42040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46620	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:19139071-19140546 REVERSE LENGTH=491	SoyBase	E_val: 0	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0743	KOG	AAA+-type ATPase	JGI		ISS
PTHR23070	Panther	BCS1 AAA-TYPE ATPASE	JGI		ISS
PTHR23070:SF1	Panther	AAA-TYPE ATPASE-RELATED	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
UniRef100_G7L522	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial chaperone BCS1 n=1 Tax=Medicago truncatula RepID=G7L522_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JS19	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JS19_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g42040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g42040

Paralog	Evidence	Comments
Glyma19g44740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g42040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g259300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g42040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g42040

Limit To All Plant Sequences

>Glyma03g42040.1   sequence type=CDS   gene model=Glyma03g42040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCTTTTCAGTTTCACCTCCATCGTTTTAATCGCGTTTGGGGCGACGCTGTTCCAGACGGGGCATGCGAAGAAGCTATGGAGAAGAATCGAAGACTGGTTCCACGTGTACCAGTTCTTCAAAGTCCCAGAACTCAACGACACGACGCAGCACAACCACCTATACAGGAAGGTCTCCCTCTACTTACATTCCCTACCTTCCATCGAAGACTCTGACTTCGCCAACCTCATCACTGGCAAGAAGCAAAACGACATCGTCCTCTGCCTCGGCCCAAACCAAACTATCGAGGACCATTTTCTCGGAGCCACACTCTTCTGGTTCAACCAAACCGGAACCTTTCTTCTCAAGATCAGAAAGGTGGACAAGCGGAGAATCCTCCGTCCTTACCTTCAGCACATTCACGCCGTCGCCGACGAAATCGACCAGCGAGGGAAGCGCGACTTGCTTCTCTTCATGAACATCGCCGACGACTTCCGACGCTGGAGATCCGTTCCGTTCACGCATCCTTCCACGTTCGACACCGTCGCCATGGAGCCGGATCTCAAAAGCAAAGTTAAATCCGATCTCGAATCGTTCCTCAGAGCGAAGCAGTACTACCACCGCCTCGGCCGCGTCTGGAAACGGAGCTTCCTCCTCTACGGTCCCTCCGGCACCGGAAAATCGAGCTTCGTCGCCGCCATGGCCAATTTCCTCTCCTACGACGTCTACGACATCGACCTCTGCAAAATCTCCAGCGATTCGGATCTGAAATCGCTCCTCCTGCAAACGACGCCGAAGTCGGTGGTGGTGATCGAGGACCTGGACCGGTTCCTCGCGGAGAAAACGGCAAGAATAAGCGCGTCGGGGATACTGAACTTCATGGACGCGCTTCTAACCTCGTGTTGCGCTGAAGAGAGGGTTATGGTGTTCACGATGAACACGAAGGAGCATGTTGACCCAAACCTGCTTCGACCGGGTCGGGTCGACGTGCATATTCATTTTCCGCTTTGTGATTTTTCGGCGTTTAAGACGCTTGCGAGTAGTTACCTTGGGGTGAAGGAGCATAAGTTGTTTCCTCAGGTGCAGGAGATTTTTCAAAACGGGGCGAGTTTGAGTCCCGCTGAAATCGGTGAGTTGATGATAGCAAACCGGAACTCACCGAGTCGGGCTATTAAATCGGTTATCACCGCCTTGCAAACGGACGGTGATGGGAGGGGGTGCGGCTTGATCGGACGGCAGACGGAGGACGATGAAATGGATGAACCTGACGGGGTTGTGTGCGGTGAGACTTTCCATACGGTTAAGGATTTGCGGAAACTGTACGGTTTTTTCAGTTTCAGGGTTACTAGAAGATCTTCGTCGTCCAATGCTTCCTTGCCCCCCGCAAGCCCATTGGAAAAAGAATAA

Predicted protein sequences of Glyma03g42040

Limit To All Plant Sequences

>Glyma03g42040.1   sequence type=predicted peptide   gene model=Glyma03g42040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILFSFTSIVLIAFGATLFQTGHAKKLWRRIEDWFHVYQFFKVPELNDTTQHNHLYRKVSLYLHSLPSIEDSDFANLITGKKQNDIVLCLGPNQTIEDHFLGATLFWFNQTGTFLLKIRKVDKRRILRPYLQHIHAVADEIDQRGKRDLLLFMNIADDFRRWRSVPFTHPSTFDTVAMEPDLKSKVKSDLESFLRAKQYYHRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLSYDVYDIDLCKISSDSDLKSLLLQTTPKSVVVIEDLDRFLAEKTARISASGILNFMDALLTSCCAEERVMVFTMNTKEHVDPNLLRPGRVDVHIHFPLCDFSAFKTLASSYLGVKEHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIKSVITALQTDGDGRGCGLIGRQTEDDEMDEPDGVVCGETFHTVKDLRKLYGFFSFRVTRRSSSSNASLPPASPLEKE*

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