Glyma03g42010 - SoyBase

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Report for Sequence Feature Glyma03g42010

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47341234
stop:	47344439
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g42010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46600	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr2:19136070-19136477 FORWARD LENGTH=135	SoyBase	E_val: 1.00E-53	ISS
GO:0010091	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome branching	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0028	KOG	Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein	JGI		ISS
PTHR10891	Panther	CALMODULIN	JGI		ISS
PTHR10891:SF148	Panther	CALCIUM-BINDING EF HAND FAMILY PROTEIN	JGI		ISS
UniRef100_G7LAU8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Centrin-2 n=1 Tax=Medicago truncatula RepID=G7LAU8_MEDTR	SoyBase	E_val: 8.00E-61	ISS
UniRef100_I1JS16	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JS16_SOYBN	SoyBase	E_val: 7.00E-84	ISS

Expression Patterns of Glyma03g42010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g42010

Paralog	Evidence	Comments
Glyma19g44710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g42010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g259100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g42010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g42010

Limit To All Plant Sequences

>Glyma03g42010.2   sequence type=transcript   gene model=Glyma03g42010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGAAAGTCTACTACCACATGGGATTTTTCATTTTGTAAAAGGCCATCTATCTACCCACCCAATTCTCATTAATTGGTCATCACTATATACAACAAGTCTTCTAATGTCACTTTCTTCTTCCAGCTTTGTTTCCACGTTCTGCAATTAAAAGAAACAAGGATTCCTTTCTCCTCCAAAAACAATGGAAAGCAACCAATCGGCAAAAGAGATCACGGTGGAAGTAGAAGAGTTCGAGGACTTGCTGCCCGTGATGGCAGAGAAGTTGGATGTGGAGACCTTTGTGTCTGAGTTGTGTGGGGGTTTCAAGCTTCTGGCTGACCCAGAAACGGGTTTGATCACTGGTGAGAGTCTTATGAGGAACTCAGCTATGTTGGGTATGGATGGGATGAGCAAAGAGGAAGCAGAAACCATGGTTAGACAGGGAGATCTTGATGGGGATGGGAAGCTCAATGAAACTGAGTTTTGCATCCTTATGGTGAGGCTTAGCCCTGGGATCATGGAAGATGCTGAGACCTGGCTTCACAAGGCACTTGAACAAGAGCTCACCAAGTCCTCAACTTAAATTCCACACTTTCCAAATCAATTGGAGAAGAAATCCCTTCAGGTGTGGCCAAGGGGGGGCTGATTTGCGACTCCTCAGGAAGGTGGATGGTCATTACAGCAACGACAACCCATCTGGTCCGATTTGATATTGTCTCTTGCTCATATGAGGACACAATCTCCATGCTCAAAAGATCAAGGATATCCAGAAATTGATTCAAAGAAACAGAGGCTGATATAGTATCCATGGGAAAGAGTCTGAGATGGACAAGTTTTGTAGGAGTAACCTAACTAAGTAACAATTTCGATGTTTCATAATCGTATTTACTATTTATTAAAAATCATGCAAGAGCTGCTGCTGCACATTTCAAAAGTCCTTTGCATTTTTAGC

Coding sequences of Glyma03g42010

Limit To All Plant Sequences

>Glyma03g42010.1   sequence type=CDS   gene model=Glyma03g42010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGCAACCAATCGGCAAAAGAGATCACGGTGGAAGTAGAAGAGTTCGAGGACTTGCTGCCCGTGATGGCAGAGAAGTTGGATGTGGAGACCTTTGTGTCTGAGTTGTGTGGGGGTTTCAAGCTTCTGGCTGACCCAGAAACGGGTTTGATCACTGGTGAGAGTCTTATGAGGAACTCAGCTATGTTGGGTATGGATGGGATGAGCAAAGAGGAAGCAGAAACCATGGTTAGACAGGGAGATCTTGATGGGGATGGGAAGCTCAATGAAACTGAGTTTTGCATCCTTATGGTGAGGCTTAGCCCTGGGATCATGGAAGATGCTGAGACCTGGCTTCACAAGGCACTTGAACAAGAGCTCACCAAGTCCTCAACTTAA

>Glyma03g42010.2   sequence type=CDS   gene model=Glyma03g42010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGCAACCAATCGGCAAAAGAGATCACGGTGGAAGTAGAAGAGTTCGAGGACTTGCTGCCCGTGATGGCAGAGAAGTTGGATGTGGAGACCTTTGTGTCTGAGTTGTGTGGGGGTTTCAAGCTTCTGGCTGACCCAGAAACGGGTTTGATCACTGGTGAGAGTCTTATGAGGAACTCAGCTATGTTGGGTATGGATGGGATGAGCAAAGAGGAAGCAGAAACCATGGTTAGACAGGGAGATCTTGATGGGGATGGGAAGCTCAATGAAACTGAGTTTTGCATCCTTATGGTGAGGCTTAGCCCTGGGATCATGGAAGATGCTGAGACCTGGCTTCACAAGGCACTTGAACAAGAGCTCACCAAGTCCTCAACTTAA

Predicted protein sequences of Glyma03g42010

Limit To All Plant Sequences

>Glyma03g42010.1   sequence type=predicted peptide   gene model=Glyma03g42010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESNQSAKEITVEVEEFEDLLPVMAEKLDVETFVSELCGGFKLLADPETGLITGESLMRNSAMLGMDGMSKEEAETMVRQGDLDGDGKLNETEFCILMVRLSPGIMEDAETWLHKALEQELTKSST*

>Glyma03g42010.2   sequence type=predicted peptide   gene model=Glyma03g42010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESNQSAKEITVEVEEFEDLLPVMAEKLDVETFVSELCGGFKLLADPETGLITGESLMRNSAMLGMDGMSKEEAETMVRQGDLDGDGKLNETEFCILMVRLSPGIMEDAETWLHKALEQELTKSST*

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