Report for Sequence Feature Glyma03g41990
Feature Type: gene_model
Chromosome: Gm03
Start: 47324455
stop: 47328154
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g41990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G01225 AT
Annotation by Michelle Graham. TAIR10: NC domain-containing protein-related | chr1:96064-97242 FORWARD LENGTH=260
SoyBase E_val: 1.00E-134 ISS
GO:0010089 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylem development
SoyBase N/A ISS
GO:0044036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PTHR13943 Panther
HRAS-LIKE SUPPRESSOR - RELATED
JGI ISS
PTHR13943:SF16 Panther
NC DOMAIN-CONTAINING PROTEIN
JGI ISS
PF04970 PFAM
NC domain
JGI ISS
UniRef100_I1JS14 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JS14_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q3EAE0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: NC domain-containing protein-like protein n=1 Tax=Arabidopsis thaliana RepID=Q3EAE0_ARATH
SoyBase E_val: 3.00E-130 ISS
Expression Patterns of Glyma03g41990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g41990
Paralog Evidence Comments
Glyma19g44681 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g41990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g258900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g41990
Coding sequences of Glyma03g41990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g41990.1 sequence type=CDS gene model=Glyma03g41990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTCTGCTTTCTAACAGAGTGGAGAGACATGAGATCAAGCCTGGTGATCACATCTACACTTACAGAGCCGTTTTCACCTATTCCCATCATGGCATTTTTGTTGGGGGAAGCAAGGTTGTACATTTCAGACCTGAAAGGAACTTAAAGTCAATGACTGAGACATCATCAAACTGGGATGATCCAACATCAAACCCATGTCCAACCTTTCCTGATTGTGGATTCAGACAGCCAAACTGTGGTGTAGTCCTTTCCTGCTTAGACTGTTTCCTTCGAAATGGGTCTCTTTACTGTTTTGAGTATGAGGTTTCACCATCTGTTTTCCTCAGCAGAATAAGGGGTGGCACATGCACTACTGCATCAGCTGACCCACCAGAGACTGTTATTCATCGAGCAATGTATCTTCTTCAAAACGGCTTTGGTAATTATAATGTTTTTCAGAACAATTGTGAGGATTTTGCCTTGTACTGCAAAACTGGTCTTTTGATACAAGACAAGCAAGGGGTTGGAAGAAGTGGCCAAGCTTCTTCTGTTATTGGTGCTCCATTGGCTGCAATGATCACTTCTCCTCTCAAGTTGTTAATGCCAAGTCCTGTTGGTGTTGCTACTGTAACAGCAGGTATGTACTGCATGAGCAGATATGCAACTGACATTGGTGTCAGAAGTGATGTGATCAAGGTGCCAGTGGAAGACTTGGCTGTGAACCTTGGATGGACTTGTCAAGAGGAGGAGATAGCTGAACATGAAACTTCAGACAGACAGATTACTACCAGATGA
Predicted protein sequences of Glyma03g41990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g41990.1 sequence type=predicted peptide gene model=Glyma03g41990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGLLSNRVERHEIKPGDHIYTYRAVFTYSHHGIFVGGSKVVHFRPERNLKSMTETSSNWDDPTSNPCPTFPDCGFRQPNCGVVLSCLDCFLRNGSLYCFEYEVSPSVFLSRIRGGTCTTASADPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCKTGLLIQDKQGVGRSGQASSVIGAPLAAMITSPLKLLMPSPVGVATVTAGMYCMSRYATDIGVRSDVIKVPVEDLAVNLGWTCQEEEIAEHETSDRQITTR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
