Glyma03g41980 - SoyBase

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Report for Sequence Feature Glyma03g41980

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47319684
stop:	47321893
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g41980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61850	AT	Annotation by Michelle Graham. TAIR10: Dof-type zinc finger DNA-binding family protein \| chr3:22895495-22897150 FORWARD LENGTH=324	SoyBase	E_val: 5.00E-67	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF02701	PFAM	Dof domain, zinc finger	JGI		ISS
UniRef100_I1JS12	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JS12_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0GLD4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dof18 n=1 Tax=Glycine max RepID=Q0GLD4_SOYBN	SoyBase	E_val: 2.00E-152	ISS

Expression Patterns of Glyma03g41980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41980

Paralog	Evidence	Comments
Glyma19g44670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g258800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g41980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g41980

Limit To All Plant Sequences

>Glyma03g41980.4   sequence type=transcript   gene model=Glyma03g41980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAAAGGCAAAAACATCATTAATTAAGATGAATTGCAAGTATAGTCAAAACTGACACATTTCTTTTCAAACTTTCTTTTTTTCTTTGCATCATTCATAAAGTAATAAGCCAGCAGATAAAGCCATTCCACAAACGAACTAAAACATTCTTTCTTGCACTAAAGAGCAGCTGCAGACAAACAAGCCTCTTTTGGGGTTGGATTAGCTGGTGAGATCCATGGAAGATATAGGTCCGAATTCATGCACAAGGCCAGTGACAGAGAAGAAAGCAAGACCCCAAGAACAATTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCCGTTGGAGGTGGCTCTAGGAAAAACAAGAGGGTCACCTCATCAAAGGTTCCTGACTTGAATCCACCAATTAGCCTCTCATCAGTCTCAGCCATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATCTGGCTTTTCCTGCAGCTATGGACAAGTATCATCATGGCACGTCTCCGTATGTTGAGATGCCAAAACTTGAAATTGGTGGTGATCACAGTACTAGTCATCATAGTCACCACCATAGCCATAGCCCTTCTTCTGCAGTTGAGCTACTACGGTCTGGCATGGATTCTAGGGGTTTGAATCCTTATGCTCCTAATTCCTTGATGTCAGGCTCAGATCATTCCCTTTATACACCTGGCTATCCCATGCAGGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGATGGATTTGGAAATAGATCATATGGGGTTCAAGAGAATGGTGGAGGGAGGCTTTTGTTCCCTTTTGGAGACATCAAGCACCTTTCTGCAGGTCTTGAAGTGGAACACAATAAAGAACAAGGAAATAATTCAACTGGATATTGGACTGGTTGGTGAAGGGTCTTCATGGTAAGGAAAGAAAAGAAATATTGGGAGAACATAAATATCAACCTGCATTGTTTTCTTTCTCTTCACTGTTTCTATCTATCCGCTTGAAGTTGTTCAGATCACTAACAATAGGATACACATGGTTACTCTATTTTGTATACATTATTATTATTATTACATTTCTATTCGAGCAATGTGAGGATTTTACAGCTCATCTTGGTTATTTTTAATATGTTTAGAGAGAGAGAGATAGAAGAAGAGGTGAATATAGGGTCTGCTTTTGTCCAAGTCATGCAATGCAATGACCTGTATTCATGAATTCTTCTGTCAAGGAGTAGATACATATCTATCGATCACCTTTATTGATGTATGCATGCTTTCAAAGATTTGGTACAAAATGACTTTTGATGATTAAGGAAAGAGTCAGATATTCAAGTTTGTAACCATAATTATACATGTATTGGATTGGTTTGTGTGTTCTTTCCTATTACAAAAATTTCTATCTATGTCGATCTATGCAAAAATTAGTGGGTTTGTCAGCTTTGATATCTAAATGACCACATCCGAGATT

>Glyma03g41980.5   sequence type=transcript   gene model=Glyma03g41980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAAAGGCAAAAACATCATTAATTAAGATGAATTGCAAGTATAGTCAAAACTGACACATTTCTTTTCAAACTTTCTTTTTTTCTTTGCATCATTCATAAAGTAATAAGCCAGCAGATAAAGCCATTCCACAAACGAACTAAAACATTCTTTCTTGCACTAAAGAGCAGCTGCAGACAAACAAGCTGGTGAGATCCATGGAAGATATAGGTCCGAATTCATGCACAAGGCCAGTGACAGAGAAGAAAGCAAGACCCCAAGAACAATTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCCGTTGGAGGTGGCTCTAGGAAAAACAAGAGGGTCACCTCATCAAAGGTTCCTGACTTGAATCCACCAATTAGCCTCTCATCAGTCTCAGCCATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATCTGGCTTTTCCTGCAGCTATGGACAAGTATCATCATGGCACGTCTCCGTATGTTGAGATGCCAAAACTTGAAATTGGTGGTGATCACAGTACTAGTCATCATAGTCACCACCATAGCCATAGCCCTTCTTCTGCAGTTGAGCTACTACGGTCTGGCATGGATTCTAGGGGTTTGAATCCTTATGCTCCTAATTCCTTGATGTCAGGCTCAGATCATTCCCTTTATACACCTGGCTATCCCATGCAGGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGATGGATTTGGAAATAGATCATATGGGGTTCAAGAGAATGGTGGAGGGAGGCTTTTGTTCCCTTTTGGAGACATCAAGCACCTTTCTGCAGGTCTTGAAGTGGAACACAATAAAGAACAAGGAAATAATTCAACTGGATATTGGACTGGTTGGTGAAGGGTCTTCATGGTAAGGAAAGAAAAGAAATATTGGGAGAACATAAATATCAACCTGCATTGTTTTCTTTCTCTTCACTGTTTCTATCTATCCGCTTGAAGTTGTTCAGATCACTAACAATAGGATACACATGGTTACTCTATTTTGTATACATTATTATTATTATTACATTTCTATTCGAGCAATGTGAGGATTTTACAGCTCATCTTGGTTATTTTTAATATGTTTAGAGAGAGAGAGATAGAAGAAGAGGTGAATATAGGGTCTGCTTTTGTCCAAGTCATGCAATGCAATGACCTGTATTCATGAATTCTTCTGTCAAGGAGTAGATACATATCTATCGATCACCTTTATTGATGTATGCATGCTTTCAAAGATTTGGTACAAAATGACTTTTGATGATTAAGGAAAGAGTCAGATATTCAAGTTTGTAACCATAATTATACATGTATTGGATTGGTTTGTGTGTTCTTTCCTATTACAAAAATTTCTATCTATGTCGATCTATGCAAAAATTAGTGGGTTTGTCAGCTTTGATATCTAAATGACCACATCCGAGATT

Coding sequences of Glyma03g41980

Limit To All Plant Sequences

>Glyma03g41980.3   sequence type=CDS   gene model=Glyma03g41980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGGCTACTACCGCTCACTGGGCAAACATGGTGTTCGATTTTTTTCTCTTGTCTTTTCTTTGATGCACAAATTCCGAGCTGTTCATTCTGAGCTGGTGAGATCCATGGAAGATATAGGTCCGAATTCATGCACAAGGCCAGTGACAGAGAAGAAAGCAAGACCCCAAGAACAATTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCCGTTGGAGGTGGCTCTAGGAAAAACAAGAGGGTCACCTCATCAAAGGTTCCTGACTTGAATCCACCAATTAGCCTCTCATCAGTCTCAGCCATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATCTGGCTTTTCCTGCAGCTATGGACAAGTATCATCATGGCACGTCTCCGTATGTTGAGATGCCAAAACTTGAAATTGGTGGTGATCACAGTACTAGTCATCATAGTCACCACCATAGCCATAGCCCTTCTTCTGCAGTTGAGCTACTACGGTCTGGCATGGATTCTAGGGGTTTGAATCCTTATGCTCCTAATTCCTTGATGTCAGGCTCAGATCATTCCCTTTATACACCTGGCTATCCCATGCAGGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGATGGATTTGGAAATAGATCATATGGGGTTCAAGAGAATGGTGGAGGGAGGCTTTTGTTCCCTTTTGGAGACATCAAGCACCTTTCTGCAGGTCTTGAAGTGGAACACAATAAAGAACAAGGAAATAATTCAACTGGATATTGGACTGGTTGGTGA

>Glyma03g41980.4   sequence type=CDS   gene model=Glyma03g41980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATATAGGTCCGAATTCATGCACAAGGCCAGTGACAGAGAAGAAAGCAAGACCCCAAGAACAATTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCCGTTGGAGGTGGCTCTAGGAAAAACAAGAGGGTCACCTCATCAAAGGTTCCTGACTTGAATCCACCAATTAGCCTCTCATCAGTCTCAGCCATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATCTGGCTTTTCCTGCAGCTATGGACAAGTATCATCATGGCACGTCTCCGTATGTTGAGATGCCAAAACTTGAAATTGGTGGTGATCACAGTACTAGTCATCATAGTCACCACCATAGCCATAGCCCTTCTTCTGCAGTTGAGCTACTACGGTCTGGCATGGATTCTAGGGGTTTGAATCCTTATGCTCCTAATTCCTTGATGTCAGGCTCAGATCATTCCCTTTATACACCTGGCTATCCCATGCAGGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGATGGATTTGGAAATAGATCATATGGGGTTCAAGAGAATGGTGGAGGGAGGCTTTTGTTCCCTTTTGGAGACATCAAGCACCTTTCTGCAGGTCTTGAAGTGGAACACAATAAAGAACAAGGAAATAATTCAACTGGATATTGGACTGGTTGGTGA

>Glyma03g41980.5   sequence type=CDS   gene model=Glyma03g41980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATATAGGTCCGAATTCATGCACAAGGCCAGTGACAGAGAAGAAAGCAAGACCCCAAGAACAATTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCCGTTGGAGGTGGCTCTAGGAAAAACAAGAGGGTCACCTCATCAAAGGTTCCTGACTTGAATCCACCAATTAGCCTCTCATCAGTCTCAGCCATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATCTGGCTTTTCCTGCAGCTATGGACAAGTATCATCATGGCACGTCTCCGTATGTTGAGATGCCAAAACTTGAAATTGGTGGTGATCACAGTACTAGTCATCATAGTCACCACCATAGCCATAGCCCTTCTTCTGCAGTTGAGCTACTACGGTCTGGCATGGATTCTAGGGGTTTGAATCCTTATGCTCCTAATTCCTTGATGTCAGGCTCAGATCATTCCCTTTATACACCTGGCTATCCCATGCAGGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGATGGATTTGGAAATAGATCATATGGGGTTCAAGAGAATGGTGGAGGGAGGCTTTTGTTCCCTTTTGGAGACATCAAGCACCTTTCTGCAGGTCTTGAAGTGGAACACAATAAAGAACAAGGAAATAATTCAACTGGATATTGGACTGGTTGGTGA

Predicted protein sequences of Glyma03g41980

Limit To All Plant Sequences

>Glyma03g41980.3   sequence type=predicted peptide   gene model=Glyma03g41980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHGYYRSLGKHGVRFFSLVFSLMHKFRAVHSELVRSMEDIGPNSCTRPVTEKKARPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRVTSSKVPDLNPPISLSSVSAISSQNPKMQGVHDLNLAFPAAMDKYHHGTSPYVEMPKLEIGGDHSTSHHSHHHSHSPSSAVELLRSGMDSRGLNPYAPNSLMSGSDHSLYTPGYPMQEIKPNLSFSVDDGFGNRSYGVQENGGGRLLFPFGDIKHLSAGLEVEHNKEQGNNSTGYWTGW*

>Glyma03g41980.4   sequence type=predicted peptide   gene model=Glyma03g41980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDIGPNSCTRPVTEKKARPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRVTSSKVPDLNPPISLSSVSAISSQNPKMQGVHDLNLAFPAAMDKYHHGTSPYVEMPKLEIGGDHSTSHHSHHHSHSPSSAVELLRSGMDSRGLNPYAPNSLMSGSDHSLYTPGYPMQEIKPNLSFSVDDGFGNRSYGVQENGGGRLLFPFGDIKHLSAGLEVEHNKEQGNNSTGYWTGW*

>Glyma03g41980.5   sequence type=predicted peptide   gene model=Glyma03g41980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDIGPNSCTRPVTEKKARPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRVTSSKVPDLNPPISLSSVSAISSQNPKMQGVHDLNLAFPAAMDKYHHGTSPYVEMPKLEIGGDHSTSHHSHHHSHSPSSAVELLRSGMDSRGLNPYAPNSLMSGSDHSLYTPGYPMQEIKPNLSFSVDDGFGNRSYGVQENGGGRLLFPFGDIKHLSAGLEVEHNKEQGNNSTGYWTGW*

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