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Report for Sequence Feature Glyma03g41965

Feature Type:gene_model
Chromosome:Gm03
Start:47302269
stop:47304144
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g41965
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38620AT Annotation by Michelle Graham. TAIR10: myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282 SoyBaseE_val: 3.00E-52ISS
GO:0006598GO-bp Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process SoyBaseN/AISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009698GO-bp Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009805GO-bp Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0042398GO-bp Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:2000762GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of phenylpropanoid metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
KOG0048 KOG Transcription factor, Myb superfamily JGI ISS
PTHR10641Panther MYB-RELATED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_Q0PJK2UniRef Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB185 n=1 Tax=Glycine max RepID=Q0PJK2_SOYBN SoyBaseE_val: 1.00E-142ISS
UniRef100_UPI000233A7B6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A7B6 related cluster n=1 Tax=unknown RepID=UPI000233A7B6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g41965
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g41965 not represented in the dataset
Glyma03g41965 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41965
ParalogEvidenceComments
Glyma19g44660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41965 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g258700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g41965
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g41965
>Glyma03g41965.2   sequence type=transcript   gene model=Glyma03g41965   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATTGATTTTATAGTAATTATTTTAAAAGTTAAATTGATAATAATTTCTTTCCATATATATAAATAAGAGTTAATAAAAATTAAACTCTTTATCTCTTATTTTTATTTTATAAATTATACATGCGTATCAAAAGTATTCGTGGGGCCAAGGTATCCCATGATAGCTGTCAAAAATTATATTTTCTAACGTTTTAATTCAAGTTGTCCCCCACCTTCAATCATCCGAGTTAATTACCTTGAACTTTATTTTACCTTGTCTGTAAACATGGTCTTCTTAGATGCGGAAAAAGTTGCCGACTGAGATGGATGAACTATCTGAGACCTGATATAAAGAGAGGAAACATAACCCCAGAAGAAGATGATCTTATAATTAGAATGCACTCACTTTTAGGAAATAGATGGTCCCTCATCGCGGGAAGATTACCAGGACGAACAGATAATGAGATTAAGAACTACTGGAATACCCATCTCAGTAAGAAGCTGAGAAATCAAGGAACGGATCCAAATACACACGACAAGTTAACTGAGGCACCAGAGAAGAAGAAGGGCAGAAAGAAGAATAAGCAAAAGAGTACTGAGAATAACAAAGGGTCAGAGAAGACCTTAGTTTATCTACCAAAACCAATCAGGGTTAAGGCTTTATCGTCATGTATACCCAGAACGGATAGCACCTTAACCCTTGATTCGAATTCAGCTACGACTGCATCAACAAGCCAAGAGAAAGTTCAAAGCCCAGAAGCAGAAACAAAAGAGGTGAACATGGTTTGGGGGGTAAGTGACAATATTGGAGACAATGGTGGGATTGGAATATTCTTTGGTGAAGACCATGACCTAGTCAACAGTGCCTCTTACATGGAATGCTATTCTGATGATCATGATACGCTAGAAAAGCTCTATGAAGAGTACTTGCAGCTCTTGAATGTTGAGGAGAAACCAGATGAATTAGATTCTTTTGCTCAATCTTTATTGGTGTAAACGTACAAATAATGGTGAAAATATATGGTTGGAACAAATAAAACAAATTAAGTTTGCTCCTGCTAGCACGTGAACATATTGTATTATTTATTCCTCAGATTAGTATCATTTATTTAGAATATTTTTTAAATTTTAAATATTATTAATTTAACTATAACA
Coding sequences of Glyma03g41965
>Glyma03g41965.1   sequence type=CDS   gene model=Glyma03g41965   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGGCACAGGCCAGTGGAGATCACTACCAAAAACAGCTGGTCTTCTTAGATGCGGAAAAAGTTGCCGACTGAGATGGATGAACTATCTGAGACCTGATATAAAGAGAGGAAACATAACCCCAGAAGAAGATGATCTTATAATTAGAATGCACTCACTTTTAGGAAATAGATGGTCCCTCATCGCGGGAAGATTACCAGGACGAACAGATAATGAGATTAAGAACTACTGGAATACCCATCTCAGTAAGAAGCTGAGAAATCAAGGAACGGATCCAAATACACACGACAAGTTAACTGAGGCACCAGAGAAGAAGAAGGGCAGAAAGAAGAATAAGCAAAAGAGTACTGAGAATAACAAAGGGTCAGAGAAGACCTTAGTTTATCTACCAAAACCAATCAGGGTTAAGGCTTTATCGTCATGTATACCCAGAACGGATAGCACCTTAACCCTTGATTCGAATTCAGCTACGACTGCATCAACAAGCCAAGAGAAAGTTCAAAGCCCAGAAGCAGAAACAAAAGAGGTGAACATGGTTTGGGGGGTAAGTGACAATATTGGAGACAATGGTGGGATTGGAATATTCTTTGGTGAAGACCATGACCTAGTCAACAGTGCCTCTTACATGGAATGCTATTCTGATGATCATGATACGCTAGAAAAGCTCTATGAAGAGTACTTGCAGCTCTTGAATGTTGAGGAGAAACCAGATGAATTAGATTCTTTTGCTCAATCTTTATTGGTGTAA

>Glyma03g41965.2   sequence type=CDS   gene model=Glyma03g41965   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTATCTGAGACCTGATATAAAGAGAGGAAACATAACCCCAGAAGAAGATGATCTTATAATTAGAATGCACTCACTTTTAGGAAATAGATGGTCCCTCATCGCGGGAAGATTACCAGGACGAACAGATAATGAGATTAAGAACTACTGGAATACCCATCTCAGTAAGAAGCTGAGAAATCAAGGAACGGATCCAAATACACACGACAAGTTAACTGAGGCACCAGAGAAGAAGAAGGGCAGAAAGAAGAATAAGCAAAAGAGTACTGAGAATAACAAAGGGTCAGAGAAGACCTTAGTTTATCTACCAAAACCAATCAGGGTTAAGGCTTTATCGTCATGTATACCCAGAACGGATAGCACCTTAACCCTTGATTCGAATTCAGCTACGACTGCATCAACAAGCCAAGAGAAAGTTCAAAGCCCAGAAGCAGAAACAAAAGAGGTGAACATGGTTTGGGGGGTAAGTGACAATATTGGAGACAATGGTGGGATTGGAATATTCTTTGGTGAAGACCATGACCTAGTCAACAGTGCCTCTTACATGGAATGCTATTCTGATGATCATGATACGCTAGAAAAGCTCTATGAAGAGTACTTGCAGCTCTTGAATGTTGAGGAGAAACCAGATGAATTAGATTCTTTTGCTCAATCTTTATTGGTGTAA
Predicted protein sequences of Glyma03g41965
>Glyma03g41965.1   sequence type=predicted peptide   gene model=Glyma03g41965   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LGTGQWRSLPKTAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPNTHDKLTEAPEKKKGRKKNKQKSTENNKGSEKTLVYLPKPIRVKALSSCIPRTDSTLTLDSNSATTASTSQEKVQSPEAETKEVNMVWGVSDNIGDNGGIGIFFGEDHDLVNSASYMECYSDDHDTLEKLYEEYLQLLNVEEKPDELDSFAQSLLV*

>Glyma03g41965.2   sequence type=predicted peptide   gene model=Glyma03g41965   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPNTHDKLTEAPEKKKGRKKNKQKSTENNKGSEKTLVYLPKPIRVKALSSCIPRTDSTLTLDSNSATTASTSQEKVQSPEAETKEVNMVWGVSDNIGDNGGIGIFFGEDHDLVNSASYMECYSDDHDTLEKLYEEYLQLLNVEEKPDELDSFAQSLLV*






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