SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00980 | AT | Annotation by Michelle Graham. TAIR10: zinc knuckle (CCHC-type) family protein | chr4:422732-424580 REVERSE LENGTH=488 | SoyBase | E_val: 1.00E-78 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2712 | KOG | Transcriptional coactivator | JGI | ISS | |
| PTHR11439 | Panther | GAG-POL-RELATED RETROTRANSPOSON | JGI | ISS | |
| PTHR11439:SF93 | Panther | gb def: pol polyprotein [citrus x paradisi] | JGI | ISS | |
| PF02229 | PFAM | Transcriptional Coactivator p15 (PC4) | JGI | ISS | |
| PF08766 | PFAM | DEK C terminal domain | JGI | ISS | |
| UniRef100_Q93YB6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PBF68 protein n=1 Tax=Nicotiana tabacum RepID=Q93YB6_TOBAC | SoyBase | E_val: 3.00E-100 | ISS |
| UniRef100_UPI00023379BB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023379BB related cluster n=1 Tax=unknown RepID=UPI00023379BB | SoyBase | E_val: 0 | ISS |
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Glyma03g41890 not represented in the dataset |
Glyma03g41890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g44551 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g258000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g41890.1 sequence type=CDS gene model=Glyma03g41890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCGGAAACTCGACGGAAAGTGGAGGAGATGGTGTTGGATATTCTGAAGAAATCCAATATTAAAGAAGCCACTGAGTTCACCATCCGAGTCGCTGCCTCCGAGCGTCTCGGCATCGACCTCTCCGACACCGCCAGTAAGCACTTCGTGAGATCCGTCGTCGAGTCTTTTCTTCTCTCCGTCGCGGCCAATGAAAAGTCCAAAGACGCAGAGAAGAAGAAGGAGAACGAAGATATTGCCGCCAAAAACGACGACGTAGCGAAGAAGGAAGATGTCGTTGTGGCCAACGAAGAAGAGTCCCGAGAGACAGAGGTGCTGCCCAAACTGAAGAGGGATGATCCCGAACGCGTTATTTGCCACCTGTCCAACAGGAGGAACGTGGCGGTGAAAGATTTCAAAGGGACAACCCTGGTCTCAATTAGGGAGTTCTATATGAAAGATGGAAAACCACTTCCTGGTTCGAAAGGGATAAGTTTATCTTCGGAACAATGGTCGACCTTCAAGAAGAGTGTTCCTGCCATAGAGGAAGCTATCAAAAAGATGGAAGAAAGGATAGGATCGGAGCCTAATGGTAAGCAAAATGGAGATGTGTCAAATTCAGTTGTTGATGTTGCTTATCTTGAGCCTAATAGTAAGCAAAAGGGAGATGCATCAAATTCAGTTGTTGATGTTGCTACTCTTGAGCCTCATGGTAAGCAAAATGGAGATGCATCAAATTCAGTTGTTGATGTTGCTCCTCTTGAGCCTCATGGTAAGCAAAATGGAGATGCATCAAACTCAGTTGTTGATGTTGCTCCTCTTGAGCCTGTCGTCCCTATTGAGGTCATCCGTTTTGATGGGAAGAATTTCCAATTCTGGGCTCCGCAGATGGAATTACTCTTGAAACAATTAAAGATTGACTATGTGCTTGATGAACCATGCCCGAACCCTACACTAGGCAAAAGTGCCAAGGCTGAAGACATTGCTGCAACCAAGGCTGCAGAAAGGAGATGGCTGAACGATGATTTGACATGTCAACGCAATATCTTGAGCCATTTATCTGATCCTCTGTACAACCTCTATGCAAACAGAAAAATGAGTGCTAAGGATTTATGGGAAGAGTTAAAACTGGTTTATCTGTATGAGGAATTCGGAACCAAAAGATCTCAAGTGAAAAAGTATCTTGAATTTCAGATGGTTGAGGAGAAAGCAGTTATTGAGCAAATCCGAGAATTAAATGGCATTGCAGATTCTATTGCTGCTGCTGGAATTTTTATTGATGACAACTTTCATGTTAGTGCCATCATTTCAAAGCTTCCGCCATCCTGGAAGGACTTCTGCATCAAGTTAATGCGTGAGGAGTATCTACCTTACCGGAAGTTAATGGAACGTATACAGATAGAGGAAGAATATCGCTATGGAGTAAAACGAGTGGTCGAATATTCTTACAGTATGGGAGGATATCACCAGGCCTATAAAGGTGGACATAGGAGAGCTGACTATAAGCCGGCACTCGGAATGTGTAGGAATAGGCCAGAAATTATTGCGAGGAGCGTACCCTGTACTGTATGTGGCAAGAGGGGGCATCTTTCTAAACATTGCTGGAGAAGAAATGACAGACAAACTAATGAGAGGAAATCAGAAGAGGATGTGCGTATACCTACAGAAGTTGATACTCAGGGTGCTACCCAGTAG
>Glyma03g41890.1 sequence type=predicted peptide gene model=Glyma03g41890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEAETRRKVEEMVLDILKKSNIKEATEFTIRVAASERLGIDLSDTASKHFVRSVVESFLLSVAANEKSKDAEKKKENEDIAAKNDDVAKKEDVVVANEEESRETEVLPKLKRDDPERVICHLSNRRNVAVKDFKGTTLVSIREFYMKDGKPLPGSKGISLSSEQWSTFKKSVPAIEEAIKKMEERIGSEPNGKQNGDVSNSVVDVAYLEPNSKQKGDASNSVVDVATLEPHGKQNGDASNSVVDVAPLEPHGKQNGDASNSVVDVAPLEPVVPIEVIRFDGKNFQFWAPQMELLLKQLKIDYVLDEPCPNPTLGKSAKAEDIAATKAAERRWLNDDLTCQRNILSHLSDPLYNLYANRKMSAKDLWEELKLVYLYEEFGTKRSQVKKYLEFQMVEEKAVIEQIRELNGIADSIAAAGIFIDDNFHVSAIISKLPPSWKDFCIKLMREEYLPYRKLMERIQIEEEYRYGVKRVVEYSYSMGGYHQAYKGGHRRADYKPALGMCRNRPEIIARSVPCTVCGKRGHLSKHCWRRNDRQTNERKSEEDVRIPTEVDTQGATQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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