Glyma03g41860 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g41860

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47213889
stop:	47220686
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g41860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61790	AT	Annotation by Michelle Graham. TAIR10: Protein with RING/U-box and TRAF-like domains \| chr3:22871974-22873543 REVERSE LENGTH=326	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG3002	KOG	Zn finger protein	JGI		ISS
PTHR10315	Panther	SEVEN IN ABSENTIA HOMOLOG	JGI		ISS
PF03145	PFAM	Seven in absentia protein family	JGI		ISS
UniRef100_H8WVC3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin ligase n=2 Tax=Lotus japonicus RepID=H8WVC3_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1JS01	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JS01_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g41860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41860

Paralog	Evidence	Comments
Glyma19g44520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g257700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g41860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g41860

Limit To All Plant Sequences

>Glyma03g41860.2   sequence type=transcript   gene model=Glyma03g41860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCAATTCCATCCCGATCTCTTTATTGTCTTCTTCTTCTCTCTTCCTGGTTTTCGTTGGAGAATCCTGAAAGCCGTTTGATTTTAATCAAAGGGTCATCAGGATTCGGACACCAATATCTCGAATCACTCCTCTGTTGTCTTGGAAGAAGACCAAGCAAAGGAAACGAAGAAAAACATCAATTTTTGCAAGCAACAATCTTCTTTCTTCTTCTTCTGCCCCTTTTCTTCTCTTCTCTTGTCTTAAAACACACACACACACAACATAGCCACCCATCTGCTGAGGCTGAAGCTGAAGCGTCACAAGTCACATACATATGATTCGAGTGGCCACAAATTAAGAGTGAGAGAGAATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCATCATCAGTTTTCTTCAATCTCCAAGCTTCATAACAGTGGCCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTTTGCACCAACTCTATGTACCCTCCTATCCATCAGTGCCACAACGGTCACACACTTTGCTCAACTTGCAAGACAAGGGTACACAATCGATGCCCAACTTGCCGGCAGGAACTCGGTGATATAAGGTGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATTTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTTAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTATGCCGGGTCAGACTGCTCGGTGGTTGGGGATATTCCATGCCTTGTCGCTCATTTAAGGGACGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCCAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTGGGCATGGCTCCAGTTTACATGGCATTCCTCCGATTCATGGGTGATGAAAGAGAGGCGCGGAACTACAGCTACAGCTTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAGGTAAGAGACAGCCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCGGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTGTGTAGCTAGGTTGATTGCATATTCTCTTGATTGCTATTTCTTGCTGTAGATAATTTGAGAAGTGTTAATCTTTGACTGGTGAATGGTTATGGGGATATTTCAACTTCCAAACAAAATAAAAAAACTGAGTTCTAACCAAGATACTGTCAGATATTTGGTCTCCTACGTGTATCATATGCTAAATCACTTGAGATTCTCAAAAATATTTAAGGGGGTTGTTACTTTT

>Glyma03g41860.3   sequence type=transcript   gene model=Glyma03g41860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTAAATAATAAATGAGTACTTGATCTACATTTTCTCTCTCTTCATTCTCCAACATCTACGTTATCTCCTCCAATTCCATCCCGATCTCTTTATTGTCTTCTTCTTCTCTCTTCCTGGTTTTCGTTGGAGAATCCTGAAAGCCGTTTGATTTTAATCAAAGGGTCATCAGGATTCGGACACCAATATCTCGAATCACTCCTCTGTTGTCTTGGAAGAAGACCAAGCAAAGGAAACGAAGAAAAACATCAATTTTTGCAAGCAACAATCTTCTTTCTTCTTCTTCTGCCCCTTTTCTTCTCTTCTCTTGTCTTAAAACACACACACACACAACATAGCCACCCATCTGCTGAGGCTGAAGCTGAAGCGTCACAAGTCACATACATATGATTCGAGTGGCCACAAATTAAGAGTGAGAGAGAATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCATCATCAGTTTTCTTCAATCTCCAAGCTTCATAACAGTGGCCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTTTGCACCAACTCTATGTACCCTCCTATCCATCAGTGCCACAACGGTCACACACTTTGCTCAACTTGCAAGACAAGGGTACACAATCGATGCCCAACTTGCCGGCAGGAACTCGGTGATATAAGGTGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATTTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTTAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTATGCCGGGTCAGACTGCTCGGTGGTTGGGGATATTCCATGCCTTGTCGCTCATTTAAGGGACGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCCAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTGGGCATGGCTCCAGTTTACATGGCATTCCTCCGATTCATGGGTGATGAAAGAGAGGCGCGGAACTACAGCTACAGCTTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAGGTAAGAGACAGCCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCGGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGTTTCTGAACCGGATCAAGTCCCAAATGGATCAGAGTCAATGGTGAACAACTCGGAGATAGCAAGTTTGTACCTTTTGAATTAAAAAAATAGTTTAGGTCAAAATATTTTAGATAGTGCGAAAAAAGGGTTTTAACTTGCATAACTATTTTTTTTTACGAAGGTTAAAATTATCTTTAGGTACAAAAGGCTACAATATTTGCAAAAAATAATATTTATTGGCATATTTGGAGTATAAATCTCTAGACTCCTTGGTGACTTTCGCCATTACATTGAAAAACAGCATTATTGTATTACCAGCTAAAGCAATTAGCAATATGATAGCGTCAATTGCATGAC

Coding sequences of Glyma03g41860

Limit To All Plant Sequences

>Glyma03g41860.1   sequence type=CDS   gene model=Glyma03g41860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCATCATCAGTTTTCTTCAATCTCCAAGCTTCATAACAGTGGCCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTTTGCACCAACTCTATGTACCCTCCTATCCATCAGTGCCACAACGGTCACACACTTTGCTCAACTTGCAAGACAAGGGTACACAATCGATGCCCAACTTGCCGGCAGGAACTCGGTGATATAAGGTGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATTTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTTAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTATGCCGGGTCAGACTGCTCGGTGGTTGGGGATATTCCATGCCTTGTCGCTCATTTAAGGGACGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCCAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTGGGCATGGCTCCAGTTTACATGGCATTCCTCCGATTCATGGGTGATGAAAGAGAGGCGCGGAACTACAGCTACAGCTTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAGGTAAGAGACAGCCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCGGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTGTGTAGCTAG

>Glyma03g41860.2   sequence type=CDS   gene model=Glyma03g41860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCATCATCAGTTTTCTTCAATCTCCAAGCTTCATAACAGTGGCCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTTTGCACCAACTCTATGTACCCTCCTATCCATCAGTGCCACAACGGTCACACACTTTGCTCAACTTGCAAGACAAGGGTACACAATCGATGCCCAACTTGCCGGCAGGAACTCGGTGATATAAGGTGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATTTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTTAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTATGCCGGGTCAGACTGCTCGGTGGTTGGGGATATTCCATGCCTTGTCGCTCATTTAAGGGACGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCCAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTGGGCATGGCTCCAGTTTACATGGCATTCCTCCGATTCATGGGTGATGAAAGAGAGGCGCGGAACTACAGCTACAGCTTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAGGTAAGAGACAGCCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCGGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTGTGTAGCTAG

>Glyma03g41860.3   sequence type=CDS   gene model=Glyma03g41860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCATCATCAGTTTTCTTCAATCTCCAAGCTTCATAACAGTGGCCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTTTGCACCAACTCTATGTACCCTCCTATCCATCAGTGCCACAACGGTCACACACTTTGCTCAACTTGCAAGACAAGGGTACACAATCGATGCCCAACTTGCCGGCAGGAACTCGGTGATATAAGGTGTTTGGCATTAGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATTTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTTAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTATGCCGGGTCAGACTGCTCGGTGGTTGGGGATATTCCATGCCTTGTCGCTCATTTAAGGGACGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCCAATCCCATGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTGGGCATGGCTCCAGTTTACATGGCATTCCTCCGATTCATGGGTGATGAAAGAGAGGCGCGGAACTACAGCTACAGCTTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAGGTAAGAGACAGCCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCGGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGTTTCTGAACCGGATCAAGTCCCAAATGGATCAGAGTCAATGGTGAACAACTCGGAGATAGCAAGTTTGTACCTTTTGAATTAA

Predicted protein sequences of Glyma03g41860

Limit To All Plant Sequences

>Glyma03g41860.1   sequence type=predicted peptide   gene model=Glyma03g41860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSSIESSTVSSMTMMEEDEHPHHQFSSISKLHNSGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS*

>Glyma03g41860.2   sequence type=predicted peptide   gene model=Glyma03g41860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSSIESSTVSSMTMMEEDEHPHHQFSSISKLHNSGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS*

>Glyma03g41860.3   sequence type=predicted peptide   gene model=Glyma03g41860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSSIESSTVSSMTMMEEDEHPHHQFSSISKLHNSGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEVSEPDQVPNGSESMVNNSEIASLYLLN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain