SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G01010 | AT | Annotation by Michelle Graham. TAIR10: cyclic nucleotide-gated channel 13 | chr4:434569-437242 REVERSE LENGTH=696 | SoyBase | E_val: 3.00E-107 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006811 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ion transport | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005216 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ion channel activity | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0030551 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding | SoyBase | N/A | ISS |
| PTHR10217 | Panther | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL | JGI | ISS | |
| PTHR10217:SF7 | Panther | POTASSIUM CHANNEL PROTEIN EAG-RELATED | JGI | ISS | |
| PF00027 | PFAM | Cyclic nucleotide-binding domain | JGI | ISS | |
| UniRef100_G7L436 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclic nucleotide-gated channel C n=1 Tax=Medicago truncatula RepID=G7L436_MEDTR | SoyBase | E_val: 3.00E-117 | ISS |
| UniRef100_I1JRZ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRZ6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g41790 not represented in the dataset |
Glyma03g41790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g257100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g41790.2 sequence type=CDS gene model=Glyma03g41790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGATAAAAAAATGCCTTGATTGGGATGGAGCATTTATGATCACTGTCTGTGTTCTTTGGACTTTCTTTGATCTATTTCACATTCTTCGCATAATCTTTCAGTTTAAGACAGGTTTCGTTGCCCCTTCCTCTCGTGTTTTTGGAAGGGGTGAGCTCACTGATGATCCTGTGGCTATAATGAAAAGATACTTAACTTCACACTTCATCATTGATATTCTATCAATTATTCCACTTTCGCAGGTGATTGTTTTAGCCATTCCAAACCTAAAAATGTCGGATCCATTACTAGTAAAGGATTTGTTGAAGTATTCAGTATATGCCAAGGCTTTGGCGGATCTATCCACTATACCAAGAAACAAAAACACCTTCAATTTTGGAATATTTTTTGATGCTCTAGATTCAGGTGTGGTCGAATCAACAACGGTTCTTTATCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGGGCAGTTTAAGGAAAGAGATGAGAGTGAAGAGACATGACATAGAACTTTGGATGTCCCACCGAATGCTACCTGAGTTCCTAAAGGAAAGAATTAGACGGAATGAACAATACAAATGGCAAGAAAATAGGGGTGTCGATGAGGAGACATTAATTCGTAATCTTCCTAGATATCTCAGGAGGGACCTAAAGCGTCATTTTTGCTTAGATTTAGTTAAAAGGGTGCCAATGTTTGAGGAAATGGATCAGCAGTTGTTGGATACAATCTTTATTGTTCGTGAAGGAGATCCAGTTGAGGAGATGCTTTTCATTATGAGTAGAAAAGTTTCTTCTGTGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTGTTTCTCATGGCTGGTGACTTCTGTGGAGAGGAGATTCTGATTTGGGCCTCGGATCCCAGCTCCTCCTCAAAATTACCCATTTCAACCAGGACTGTACAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGTCTGAAGACTTGAAGCTTCTTGCTTCTGAATTTCGAAATCATGGCGGCAAACAGCTCCACCACGCTCTCAGGCAAGGTTTGATAAGGGCATGGGCTGCCTGTTTCATACAAGCAGCTTGGAGCCGATACTGGAAAAAGAAGATTGAGAGGTCATTGCATGAAGCCGAAGACAAGCTAAAAGATGCTTTGCAAGCTGAGCCAGATTTCACTGCTCAGAATCACTAA
>Glyma03g41790.2 sequence type=predicted peptide gene model=Glyma03g41790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKIKKCLDWDGAFMITVCVLWTFFDLFHILRIIFQFKTGFVAPSSRVFGRGELTDDPVAIMKRYLTSHFIIDILSIIPLSQVIVLAIPNLKMSDPLLVKDLLKYSVYAKALADLSTIPRNKNTFNFGIFFDALDSGVVESTTVLYQKFFYCFWWGLGSLRKEMRVKRHDIELWMSHRMLPEFLKERIRRNEQYKWQENRGVDEETLIRNLPRYLRRDLKRHFCLDLVKRVPMFEEMDQQLLDTIFIVREGDPVEEMLFIMSRKVSSVTTNGGRTGFFNSLFLMAGDFCGEEILIWASDPSSSSKLPISTRTVQTISEVEAFALMSEDLKLLASEFRNHGGKQLHHALRQGLIRAWAACFIQAAWSRYWKKKIERSLHEAEDKLKDALQAEPDFTAQNH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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