Glyma03g41760 - SoyBase

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Report for Sequence Feature Glyma03g41760

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47160593
stop:	47166810
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g41760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01040	AT	Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase superfamily protein \| chr4:453383-455407 FORWARD LENGTH=430	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004568	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chitinase activity	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG2091	KOG	Predicted member of glycosyl hydrolase family 18	JGI		ISS
PTHR11177	Panther	CHITINASE	JGI		ISS
PTHR11177:SF6	Panther	CHITINASE-RELATED	JGI		ISS
PF00704	PFAM	Glycosyl hydrolases family 18	JGI		ISS
UniRef100_G7K407	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chitinase domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K407_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JRZ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JRZ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g41760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41760

Paralog	Evidence	Comments
Glyma19g44401	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g256800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g41760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g41760

Limit To All Plant Sequences

>Glyma03g41760.2   sequence type=transcript   gene model=Glyma03g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCATATTTGAAAGTCACCAAAATGAATATTTATCTTTTTCTTTTTCTTTTCACAAATCGCACGATAGGAGGCACTACGCTGTCGTTTGCGGTGTTAGAAGACCTAGTCGGGCGTGATGGCGAAGAAGCGATCAGCCCCGAGTGGCGGTCGTCGGGAAAACCGAGCCGAATCATCTTCCCGACGGCTCAACTCAGCTTCCGGTCGCAGAAAACTCGTTGCGTTCTTCATCGTATCGTCCATCATCGCTATCGTCACTTATCGTTATCGCTTCAGACAATCTTCTCCTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGGAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACATTTATCACCCATTTGGTATGATCTAAAGAGCCAACAGACTAGCTTAGTTCTAGAGGGGAGACATAATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTGATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAGGAAAAACAAAGGAACAAAGCCATTAACCTTATAGTAACAGAGTGCAAGGAAATGGGATATGATGGTATTGTTTTGGAATCTTGGTCAAGGTGGGCAGCTTATGGTATCTTGCATGATCCAAGCATGCGGAATTTGGCATTGCAGTTTGTAAAACAGCTTGGAGATGCACTGCATTCTATAAGCTCAGAGAAAATTAGTGGGCAGCAGCTGCAGTTGGTCTATGTTATAGGTTCACCTTCTGAGAAGTTGCAAGAGCATGATTTTGGTCCTAAAGATCTTGAGACTTTAAGTGAAGCTGTGGATGGATTCTCGTTAATGACATATGATTTCTCTAATCCTCATAATCCTGGTCCTAATGCACCTTTGAAATGGATTCAAATTGTTCTACAGCTGCTTCTCGGTACCTCTGGCAATAGAGCCCAAAGCCTTGCCCCCAAGATACTTCTTGGTATCAACTTCTATGGAAATGATTTCTCCCTTTCAAGGGATGCAGGGGGTGGAGCTATTATTGGGAGAGATTACCTGGCACTTTTGGAGAAGCACTGGCCTGAACTGCAGTGGGATAAGAATAGTGGGGAGCATTTTTTCTTTTACACTGACGACAAGGATATCAGGCATGTGGTATTTTATCCATCTTTGAAGTCAATTTCTTTGCGGTTAGAGGAAGCTCGTTCATGGGGATGTGGCATCTCGATCTGGGAAATTGGCCAAGGTCTGGATTATTTTTTTGACCTTCTGTGATAGCTTGTTATGTGTACTTCTTTTGTGGCCCATGTTAATGTTTATTCCTACGTCGTAATGTTGTGTATTCAGTATAATCGAAACGTACTTCAGTTAAATTGGGATTTTGTTTTTCAGAAATCTAGTTTGAGGAAATGTGCAGTTAGTTCACTTACGTGACAGCATAGAGGATATTTGAGAACGTAATAAAAATGCCATATAACAAAACACCAATAGTCCTATATTACGAATACAGGCCTTGATATAC

Coding sequences of Glyma03g41760

Limit To All Plant Sequences

>Glyma03g41760.1   sequence type=CDS   gene model=Glyma03g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGAAGCGATCAGCCCCGAGTGGCGGTCGTCGGGAAAACCGAGCCGAATCATCTTCCCGACGGCTCAACTCAGCTTCCGGTCGCAGAAAACTCGTTGCGTTCTTCATCGTATCGTCCATCATCGCTATCGTCACTTATCGTTATCGCTTCAGACAATCTTCTCCTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGGAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACATTTATCACCCATTTGGTATGATCTAAAGAGCCAACAGACTAGCTTAGTTCTAGAGGGGAGACATAATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTGATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAGGAAAAACAAAGGAACAAAGCCATTAACCTTATAGTAACAGAGTGCAAGGAAATGGGATATGATGGTATTGTTTTGGAATCTTGGTCAAGGTGGGCAGCTTATGGTATCTTGCATGATCCAAGCATGCGGAATTTGGCATTGCAGTTTGTAAAACAGCTTGGAGATGCACTGCATTCTATAAGCTCAGAGAAAATTAGTGGGCAGCAGCTGCAGTTGGTCTATGTTATAGGTTCACCTTCTGAGAAGTTGCAAGAGCATGATTTTGGTCCTAAAGATCTTGAGACTTTAAGTGAAGCTGTGGATGGATTCTCGTTAATGACATATGATTTCTCTAATCCTCATAATCCTGGTCCTAATGCACCTTTGAAATGGATTCAAATTGTTCTACAGCTGCTTCTCGGTACCTCTGGCAATAGAGCCCAAAGCCTTGCCCCCAAGATACTTCTTGGTATCAACTTCTATGGAAATGATTTCTCCCTTTCAAGGGATGCAGATGCAGGGGGTGGAGCTATTATTGGGAGAGATTACCTGGCACTTTTGGAGAAGCACTGGCCTGAACTGCAGTGGGATAAGAATAGTGGGGAGCATTTTTTCTTTTACACTGACGACAAGGATATCAGGCATGTGGTATTTTATCCATCTTTGAAGTCAATTTCTTTGCGGTTAGAGGAAGCTCGTTCATGGGGATGTGGCATCTCGATCTGGGAAATTGGCCAAGGTCTGGATTATTTTTTTGACCTTCTGTGA

>Glyma03g41760.2   sequence type=CDS   gene model=Glyma03g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGAAGCGATCAGCCCCGAGTGGCGGTCGTCGGGAAAACCGAGCCGAATCATCTTCCCGACGGCTCAACTCAGCTTCCGGTCGCAGAAAACTCGTTGCGTTCTTCATCGTATCGTCCATCATCGCTATCGTCACTTATCGTTATCGCTTCAGACAATCTTCTCCTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGGAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACATTTATCACCCATTTGGTATGATCTAAAGAGCCAACAGACTAGCTTAGTTCTAGAGGGGAGACATAATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTGATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAGGAAAAACAAAGGAACAAAGCCATTAACCTTATAGTAACAGAGTGCAAGGAAATGGGATATGATGGTATTGTTTTGGAATCTTGGTCAAGGTGGGCAGCTTATGGTATCTTGCATGATCCAAGCATGCGGAATTTGGCATTGCAGTTTGTAAAACAGCTTGGAGATGCACTGCATTCTATAAGCTCAGAGAAAATTAGTGGGCAGCAGCTGCAGTTGGTCTATGTTATAGGTTCACCTTCTGAGAAGTTGCAAGAGCATGATTTTGGTCCTAAAGATCTTGAGACTTTAAGTGAAGCTGTGGATGGATTCTCGTTAATGACATATGATTTCTCTAATCCTCATAATCCTGGTCCTAATGCACCTTTGAAATGGATTCAAATTGTTCTACAGCTGCTTCTCGGTACCTCTGGCAATAGAGCCCAAAGCCTTGCCCCCAAGATACTTCTTGGTATCAACTTCTATGGAAATGATTTCTCCCTTTCAAGGGATGCAGGGGGTGGAGCTATTATTGGGAGAGATTACCTGGCACTTTTGGAGAAGCACTGGCCTGAACTGCAGTGGGATAAGAATAGTGGGGAGCATTTTTTCTTTTACACTGACGACAAGGATATCAGGCATGTGGTATTTTATCCATCTTTGAAGTCAATTTCTTTGCGGTTAGAGGAAGCTCGTTCATGGGGATGTGGCATCTCGATCTGGGAAATTGGCCAAGGTCTGGATTATTTTTTTGACCTTCTGTGA

Predicted protein sequences of Glyma03g41760

Limit To All Plant Sequences

>Glyma03g41760.1   sequence type=predicted peptide   gene model=Glyma03g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKKRSAPSGGRRENRAESSSRRLNSASGRRKLVAFFIVSSIIAIVTYRYRFRQSSPSQGLVTTHANCQHILAENSKVSGNSSQRHYTYPVLGYITPWNSRGYELAKRFNSKFTHLSPIWYDLKSQQTSLVLEGRHNADRGWISELKKAGEALILPRVVLEASPAVLLGKEKQRNKAINLIVTECKEMGYDGIVLESWSRWAAYGILHDPSMRNLALQFVKQLGDALHSISSEKISGQQLQLVYVIGSPSEKLQEHDFGPKDLETLSEAVDGFSLMTYDFSNPHNPGPNAPLKWIQIVLQLLLGTSGNRAQSLAPKILLGINFYGNDFSLSRDADAGGGAIIGRDYLALLEKHWPELQWDKNSGEHFFFYTDDKDIRHVVFYPSLKSISLRLEEARSWGCGISIWEIGQGLDYFFDLL*

>Glyma03g41760.2   sequence type=predicted peptide   gene model=Glyma03g41760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKKRSAPSGGRRENRAESSSRRLNSASGRRKLVAFFIVSSIIAIVTYRYRFRQSSPSQGLVTTHANCQHILAENSKVSGNSSQRHYTYPVLGYITPWNSRGYELAKRFNSKFTHLSPIWYDLKSQQTSLVLEGRHNADRGWISELKKAGEALILPRVVLEASPAVLLGKEKQRNKAINLIVTECKEMGYDGIVLESWSRWAAYGILHDPSMRNLALQFVKQLGDALHSISSEKISGQQLQLVYVIGSPSEKLQEHDFGPKDLETLSEAVDGFSLMTYDFSNPHNPGPNAPLKWIQIVLQLLLGTSGNRAQSLAPKILLGINFYGNDFSLSRDAGGGAIIGRDYLALLEKHWPELQWDKNSGEHFFFYTDDKDIRHVVFYPSLKSISLRLEEARSWGCGISIWEIGQGLDYFFDLL*

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