Glyma03g41750 - SoyBase

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Report for Sequence Feature Glyma03g41750

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47154487
stop:	47158248
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g41750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24110	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 30 \| chr5:8153416-8154633 REVERSE LENGTH=303	SoyBase	E_val: 4.00E-47	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_A7LHI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY43 (Fragment) n=1 Tax=Glycine max RepID=A7LHI0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JRZ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRZ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g41750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41750

Paralog	Evidence	Comments
Glyma19g44380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g256700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g41750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g41750

Limit To All Plant Sequences

>Glyma03g41750.1   sequence type=CDS   gene model=Glyma03g41750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGAGCACCAAGAGGAAATACACTAATCTGATCCATGAACTAATCCAAGGAAAGGAACTAACAAAGCAGCTCAGTGACCATCTGGTTTCATCTTCTCCATCATCCCATGAAACCAATGAATTGTTGGTTGAGAAAATACTTTTGTCCTATGAGAAAGCACTCACCATGTTGAACTGGGGGTCTATTGTGGGAGAAGCCAAAACCACCAGTCTCAACATCATGGATTCCCGTTGTTCTTTTACAAATAGTGAAAGCCCCAGAAGTGAGGTCGTGGACCGTGAATTTGAGCACAAAGCTGTCTTCAAGAAAAGAAAGACCATGCCCAGATGGACCGAGCAAGTGAAGATTTGCTCAAGAACAGGACTTGAAGGGTCTTTGGATGATGGATATAGCTGGAGAAAATATGGCCAAAAGGATATTCTCGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACAGAGAAATGTACAAGGGTGTCTAGCAACAAAACAAGTTCAAAGGTCAGATGAAGACCCAACAACAATTGAGGTGACCTACAGAGGAAGACATACATGCACGCAAGCTAAGCATTTAAACAAGGCATTCTCATCAAACATAAAGATAGGTTTGGGGGAAAATCAATTCCAAAAGAATCAACCACTTCTAGAGAAAACACAACAACAGAACCCTGAGGGGATTTTCACCTTTGAAACAGAGCTTAAAGTCAAAACAGAGGAATTGGAAACCAAGGAGGATATCTTCCCATGGTTTTCCTTTTCTTCTTCATCAATTGGATCAGAAAATGAGGATAACATGTTACCCGACACCATGATTGAAAACCATTTCATGGAAAGCTTTTCTCCTGTATTCATATCACCAGCGACTTCAGAATCAAACCCTTTCTGTTTGTCAGCATACGACTTGGACAGCACTGGACTATTATGCCGAAACATACAAACCTCAGAATCTGATATCACTGAGATAGTTTCAGCCCTAACTTCAGTCACCAACTCCCCAATCCTGGATTTGGATATCTTACTTGATAAGGGGGATTTTGACACGGATTTCCCTTTCAACATTCCTGAATTTTTCTCTTCATAA

Predicted protein sequences of Glyma03g41750

Limit To All Plant Sequences

>Glyma03g41750.1   sequence type=predicted peptide   gene model=Glyma03g41750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESTKRKYTNLIHELIQGKELTKQLSDHLVSSSPSSHETNELLVEKILLSYEKALTMLNWGSIVGEAKTTSLNIMDSRCSFTNSESPRSEVVDREFEHKAVFKKRKTMPRWTEQVKICSRTGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTQRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTQAKHLNKAFSSNIKIGLGENQFQKNQPLLEKTQQQNPEGIFTFETELKVKTEELETKEDIFPWFSFSSSSIGSENEDNMLPDTMIENHFMESFSPVFISPATSESNPFCLSAYDLDSTGLLCRNIQTSESDITEIVSALTSVTNSPILDLDILLDKGDFDTDFPFNIPEFFSS*

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