Glyma03g41730 - SoyBase

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Report for Sequence Feature Glyma03g41730

Feature Type:	gene_model
Chromosome:	Gm03
Start:	47139017
stop:	47141546
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g41730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01070	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr4:461858-463300 REVERSE LENGTH=480	SoyBase	E_val: 0	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006805	GO-bp	Annotation by Michelle Graham. GO Biological Process: xenobiotic metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009636	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to toxin	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0042178	GO-bp	Annotation by Michelle Graham. GO Biological Process: xenobiotic catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0035251	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_A5I866	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glucosyltransferase n=1 Tax=Glycine max RepID=A5I866_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_A5I866	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucosyltransferase n=1 Tax=Glycine max RepID=A5I866_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g41730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41730

Paralog	Evidence	Comments
Glyma19g44350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g256500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g41730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g41730

Limit To All Plant Sequences

>Glyma03g41730.1   sequence type=CDS   gene model=Glyma03g41730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTCTCAAAAGAAGAAGCTCGAGTGGCACCCGCACCGGCCCTAGTGGCGATGCTGCCATCCCCTGGCATGGGCCACCTAATCCCAATGATCGAGTTCGCAAAGCGAGTGGTGTGCTACCATAACCTGGCGGTGAGCTTCGTGATCCCCACTGACGGCCCACCTTCAAAAGCCCAAAAGGCAGTTCTGGAGGCCCTTCCGGACTCAATTTCCCACACCTTCCTCCCTCCGGTCAATCTCTCCGACTTCCCGCCGGACACCAAAATCGAAACCCTGATCTCCCACACCGTCCTCCGCTCCCTTCCTTCCCTCCGCCAAGCATTCCACTCCCTCTCCGCCACAAACACCCTCTCCGCCGTCGTCGTAGACCTCTTCTCCACCGACGCCTTCGACGTCGCCGCCGAATTCAATGCCTCCCCCTACGTCTTCTATCCCTCCACTGCCACCGTCCTCTCCTTGTTCTTCCACCTCCCCACCCTCGACCAGCAGGTCCAGTGCGAGTTCCGAGACCTCCCAGAACCGGTCAGCATCCCCGGTTGCATTCCTCTTCCCGGCAAGGACCTGTTGGACCCGGTTCAGGACCGCAAAAACGAGGCCTACAAGTGGATCCTACACCACTGCAAGCGATACAAAGAAGCCGAGGGGATAATCGGGAACAGCTTCGAGGAGCTCGAACCGGGAGCCTGGAACGAGCTGCAGAAGGAAGAACAAGGGAGGCCTCCGGTTTACGCGGTGGGACCGCTTGTAAGAATGGAAGCAGGTCAGGCCGACTCGGAGTGCTTGAGGTGGCTGGACGAGCAGCCACGTGGAAGTGTTTTGTTTGTTTCCTTCGGAAGCGGTGGGACACTCTCGAGTGCACAGATCAACGAGCTGGCTCTCGGGTTGGAAAAAAGTGAGCAACGGTTTCTGTGGGTGGTGAAGAGCCCAAACGAAGAAATAGCCAACGCGACGTACTTCAGCGCCGAGAGCCAAGCGGATCCCTTGCAGTTCTTACCGGAAGGGTTCGTGGAGAGAACAAAAGGAAGAGGGTTTTTGGTTCAGTCTTGGGCTCCGCAGCCTCAGGTATTGGGCCATCCATCCACGGGTGGGTTCTTGACCCACTGCGGCTGGAACTCTATTCTGGAGAGCGTGGTGAACGGTGTGCCTTTCATAGCCTGGCCTCTGTTCGCGGAGCAGAGGACCAACGCCTTTATGCTCACGCATGACGTCAAGGTGGCGCTGAGGCCCAACGTTGCAGAGAGTGGCTTGGTGGAGAGACAGGAGATAGCCAGCCTAGTCAAGTGCCTCATGGAAGGTGAACAAGGGAAGAAGCTTCGTTACCGAATCAAGGATATCAAGGAGGCTGCGGCTAAGGCTCTCGCTCAACATGGTTCCTCCACCACCAACATCTCCAATTTGGCTCTCAAGTGGACCCACAAATTCAACTAG

Predicted protein sequences of Glyma03g41730

Limit To All Plant Sequences

>Glyma03g41730.1   sequence type=predicted peptide   gene model=Glyma03g41730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVSKEEARVAPAPALVAMLPSPGMGHLIPMIEFAKRVVCYHNLAVSFVIPTDGPPSKAQKAVLEALPDSISHTFLPPVNLSDFPPDTKIETLISHTVLRSLPSLRQAFHSLSATNTLSAVVVDLFSTDAFDVAAEFNASPYVFYPSTATVLSLFFHLPTLDQQVQCEFRDLPEPVSIPGCIPLPGKDLLDPVQDRKNEAYKWILHHCKRYKEAEGIIGNSFEELEPGAWNELQKEEQGRPPVYAVGPLVRMEAGQADSECLRWLDEQPRGSVLFVSFGSGGTLSSAQINELALGLEKSEQRFLWVVKSPNEEIANATYFSAESQADPLQFLPEGFVERTKGRGFLVQSWAPQPQVLGHPSTGGFLTHCGWNSILESVVNGVPFIAWPLFAEQRTNAFMLTHDVKVALRPNVAESGLVERQEIASLVKCLMEGEQGKKLRYRIKDIKEAAAKALAQHGSSTTNISNLALKWTHKFN*

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