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Report for Sequence Feature Glyma03g41720

Feature Type:gene_model
Chromosome:Gm03
Start:47125277
stop:47127911
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g41720
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01080AT Annotation by Michelle Graham. TAIR10: TRICHOME BIREFRINGENCE-LIKE 26 | chr4:466626-468275 REVERSE LENGTH=442 SoyBaseE_val: 2.00E-58ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
PF03005PFAM Arabidopsis proteins of unknown function JGI ISS
UniRef100_I1JRY9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JRY9_SOYBN SoyBaseE_val: 0ISS
UniRef100_O04621UniRef Annotation by Michelle Graham. Most informative UniRef hit: A_IG002N01.14 protein n=1 Tax=Arabidopsis thaliana RepID=O04621_ARATH SoyBaseE_val: 1.00E-55ISS

Expression Patterns of Glyma03g41720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41720
ParalogEvidenceComments
Glyma19g44340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41720 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g256400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g41720
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g41720
>Glyma03g41720.1   sequence type=CDS   gene model=Glyma03g41720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGTGTGATCTATTTGTGGGAGATTGGGTGGCGGAGCCAAATGGTCCAATGGACACTAATGAGAACAGCCGTGTGATTGAAGATCATCAAAACTGCATGAGGAATGGACGGCCTGATTCGGGGTACCTTTGGATAAATCATGGGCCTTTATTGGTGATTCCATTTCTCGCAACCATGTGTAATCACTACTTTGCATTCTCTCCCAGGTGGAAGCAGCTGATGAGGTGTACCATGATGAGGAATTTAGATCAAAGATATGGAAGTTCCCTTCCCACAACTTCACGCTCTCAGTTATATGAGCCATTTCCTCTTCAGAAATACAGCTTTATCTCGATACTCTGGGCGACAAATGGACCAAACCAATACAAGAATTTTGACTATGTTGTAATTGCAGGTGGCAAATGGTTTCTCAAGAAAGCAATATACCATGAAAACAACACTGTAACAGGCTGCCACAACTGCAATGGAAAGAATTTAACTGAGCATGTTTTTGACTTCATGACAAACTCAGAACACAAAGCGGTTGTATTCTTCAGAACCACCACACCAGACCACTTTGAGAATCGAGAGTGGTTCAGTGGAGGGTGCTGCAATAGGGCAGTGCCCTTCAAAGAGGACCAGGTAGAAGTGAGTTATGTTGATTCCATCATGAGAGGCATTGAACTTGAAGAGTTTCATAAGGCCAAGAATTCAACAAGTGCCAACAACTTGAAACTTTTGGACACAACTGGGCTCAGGCATTGCTACGTCCACCTTGCAAAATTGCTGCACCTGGCAATTTGTATTGGATTGAATTTTTTGTTTGTCATTTTTTCAAGAAACTACTAA
Predicted protein sequences of Glyma03g41720
>Glyma03g41720.1   sequence type=predicted peptide   gene model=Glyma03g41720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KCDLFVGDWVAEPNGPMDTNENSRVIEDHQNCMRNGRPDSGYLWINHGPLLVIPFLATMCNHYFAFSPRWKQLMRCTMMRNLDQRYGSSLPTTSRSQLYEPFPLQKYSFISILWATNGPNQYKNFDYVVIAGGKWFLKKAIYHENNTVTGCHNCNGKNLTEHVFDFMTNSEHKAVVFFRTTTPDHFENREWFSGGCCNRAVPFKEDQVEVSYVDSIMRGIELEEFHKAKNSTSANNLKLLDTTGLRHCYVHLAKLLHLAICIGLNFLFVIFSRNY*






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