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Report for Sequence Feature Glyma03g41700

Feature Type:gene_model
Chromosome:Gm03
Start:47100629
stop:47104968
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g41700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46370AT Annotation by Michelle Graham. TAIR10: Auxin-responsive GH3 family protein | chr2:19034233-19036369 FORWARD LENGTH=586 SoyBaseE_val: 0ISS
GO:0009585GO-bp Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009694GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009861GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid and ethylene-dependent systemic resistance SoyBaseN/AISS
GO:0009864GO-bp Annotation by Michelle Graham. GO Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010046GO-bp Annotation by Michelle Graham. GO Biological Process: response to mycotoxin SoyBaseN/AISS
GO:0010119GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement SoyBaseN/AISS
GO:0010193GO-bp Annotation by Michelle Graham. GO Biological Process: response to ozone SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0071365GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to auxin stimulus SoyBaseN/AISS
GO:2000030GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of response to red or far red light SoyBaseN/AISS
GO:2000377GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of reactive oxygen species metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0019899GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme binding SoyBaseN/AISS
GO:0070566GO-mf Annotation by Michelle Graham. GO Molecular Function: adenylyltransferase activity SoyBaseN/AISS
GO:0080123GO-mf Annotation by Michelle Graham. GO Molecular Function: jasmonate-amino synthetase activity SoyBaseN/AISS
PF03321PFAM GH3 auxin-responsive promoter JGI ISS
UniRef100_G7L419UniRef Annotation by Michelle Graham. Most informative UniRef hit: GH3 family protein n=1 Tax=Medicago truncatula RepID=G7L419_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JRY6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRY6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g41700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41700
ParalogEvidenceComments
Glyma19g44310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g256200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g41700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g41700
>Glyma03g41700.2   sequence type=transcript   gene model=Glyma03g41700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTACCACTCTGTCTGAATTGAGTATTCCCCCATCTCCCTTTCAAAATTAGGAACATTTTTTATGTCTAATTTTAGTAATAATAGCCGTATGGTTGTGTTGTTCTTATAACAGTGGTGCAGTTGAAGGGCCGTGAGGATGTTAGAGAAAGTGGAGGAGTTTAACATGGATAAAGTTATACAAGAGTTTGAATTATTGACAAGGGATGCAGAAAGAGTTCAGAGGGAAACACTCAAGAGGATTTTGGAGGATAACGCATCAGCAGAGTACTTGCAGAGTTTGGGTCTCAATGGAAGAACTGACCCTGAGAGTTTCAAGGCCTGTGTTCCAATGGTCACCCACAAAGAATTGGAACCTTATATCTACAGAATTATTGATGGTGATGCTTCTCCTATTCTCACTGGAAAACCCATCACAACCATGTCCTTAAGTTCTGGCACTACCCAGGGGAAACCAAAGTATGTACCTTGGAATGATGAATTGTATGAAACCACAATGCAGATATACCAGACCTCTTTTGCCTTTAGAAACAGGGAGTTTCCTATAAAAAATGGGAAGGCTTTAAGCTTTATATACGGTAGCAAACAGTTGAAAACAAAGGGGGGTCTGGCGGCTAGAACTGCCACAAGCAACGTGTTCTGTAGTGCTGGTTACAAGTGTGCAATGAGGGCACTCCAATCCCAATGCTGCAGCCCGGATGAAGTGATATTTGGTCCTGATTTTTTCCAATCACTGTACTGCCATCTGCTGTGTGGTCTGATTTTCCGGGAGGAAGTTGAGTTTGTATCTTCCACATTTGCACATAGCATTGTCCATGCTTTTAGAACCTTTGAACAAGTGTGGGAAGAGCTGTGCAATGATATCAGAGAAGGGGTTCTCACCAGAAATGTCACCGTTCCTTCCATTCGAATGGCCATGTCTAAACTGCTCAAACCAAACCCTGAATTAGCAAACGCGATCCACAAAAAATGCACGGGATTGAGCAACTGGTACGGGTTGATACCGGAGCTTTTTCCCAATGCAAAGTATATTTATGGCATCATGACCGGGTCGATGGAACCTTATTTGAAAAAAATGAGACATTATGCCGGGGAGCTGCCTTTGTTGACTGCTGACTATGGATCCTCTGAGGGATGGATAGCAGCAAATGTGAACCCACAACTTCCTCCCGAGTATGCCACTTATGCCGTGCTTCCTCACATTGGTTACTTTGAATTCATTCCTCTCTTAGAGCTTGAGAACACCAAGCCTCTGGGCCTGACTCAAGTCAAGGTTGGTCAAGAGTATGAAATTGTTATGACAAATCCAGCAGGTTTATACCGTTATAGATTGGGGGATGTGGTGAAGGTTATGGGATTCCACAATTCAACTCCAGAACTCAAGTTTATTCGAAGGAGCAGTCTTCTGCTCAACATTAACATCGACAAGAACACTGAGAAGGATTTACAATTAGCCGTGGAAGCTGCAGGGAAGTTGCTAGCAGAGGAGAAACTGGAAGTAGTTGACTTCAGTAGCCAGGTTGATTTATCCAAAGAACCAGGGCACTATGTCATCTTCTGGGAAATCAGCGGAGACGCGAGCCAAGAACTACTCCATGAATGCTGTAACTGTTTGGACAAGTCTTTCGTTGATGCAGGCTACACCAGTTCGCGCAAAGTGAACTGCATTGGTGCCCTCGAACTACGACTTGTTCGGAGAGGAACATTCCAGAAGATTCTTGATCATTACCTAGGACTAGGAACCGCTGTTAGTCAGTACAAGACACCAAGATGTGTTGGTCCTACAAACACCAGAGTGTTGCAAATCTTGAGTGAAAATGTTGTCAACAACTATCTCAGTACCGCTTTCAATTGAATAAAAATTTGGGAATAACAATCTATTATAAAGTTTACTTAGTTTTACCAATTTGTGC
Coding sequences of Glyma03g41700
>Glyma03g41700.1   sequence type=CDS   gene model=Glyma03g41700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGAGAAAGTGGAGGAGTTTAACATGGATAAAGTTATACAAGAGTTTGAATTATTGACAAGGGATGCAGAAAGAGTTCAGAGGGAAACACTCAAGAGGATTTTGGAGGATAACGCATCAGCAGAGTACTTGCAGAGTTTGGGTCTCAATGGAAGAACTGACCCTGAGAGTTTCAAGGCCTGTGTTCCAATGGTCACCCACAAAGAATTGGAACCTTATATCTACAGAATTATTGATGGTGATGCTTCTCCTATTCTCACTGGAAAACCCATCACAACCATGTCCTTAAGTTCTGGCACTACCCAGGGGAAACCAAAGTATGTACCTTGGAATGATGAATTGTATGAAACCACAATGCAGATATACCAGACCTCTTTTGCCTTTAGAAACAGGGAGTTTCCTATAAAAAATGGGAAGGCTTTAAGCTTTATATACGGTAGCAAACAGTTGAAAACAAAGGGGGGTCTGGCGGCTAGAACTGCCACAAGCAACGTGTTCTGTAGTGCTGGTTACAAGTGTGCAATGAGGGCACTCCAATCCCAATGCTGCAGCCCGGATGAAGTGATATTTGGTCCTGATTTTTTCCAATCACTGTACTGCCATCTGCTGTGTGGTCTGATTTTCCGGGAGGAAGTTGAGTTTGTATCTTCCACATTTGCACATAGCATTGTCCATGCTTTTAGAACCTTTGAACAAGTGTGGGAAGAGCTGTGCAATGATATCAGAGAAGGGGTTCTCACCAGAAATGTCACCGTTCCTTCCATTCGAATGGCCATGTCTAAACTGCTCAAACCAAACCCTGAATTAGCAAACGCGATCCACAAAAAATGCACGGGATTGAGCAACTGGTACGGGTTGATACCGGAGCTTTTTCCCAATGCAAAGTATATTTATGGCATCATGACCGGGTCGATGGAACCTTATTTGAAAAAAATGAGACATTATGCCGGGGAGCTGCCTTTGTTGACTGCTGACTATGGATCCTCTGAGGGATGGATAGCAGCAAATGTGAACCCACAACTTCCTCCCGAGTATGCCACTTATGCCGTGCTTCCTCACATTGGTTACTTTGAATTCATTCCTCTCTTAGAGCTTGAGAACACCAAGCCTCTGGGCCTGACTCAAGTCAAGGTTGGTCAAGAGTATGAAATTGTTATGACAAATCCAGCAGGTTTATACCGTTATAGATTGGGGGATGTGGTGAAGGTTATGGGATTCCACAATTCAACTCCAGAACTCAAGTTTATTCGAAGGAGCAGTCTTCTGCTCAACATTAACATCGACAAGAACACTGAGAAGGATTTACAATTAGCCGTGGAAGCTGCAGGGAAGTTGCTAGCAGAGGAGAAACTGGAAGTAGTTGACTTCAGTAGCCAGGTTGATTTATCCAAAGAACCAGGGCACTATGTCATCTTCTGGGAAATCAGCGGAGACGCGAGCCAAGAACTACTCCATGAATGCTGTAACTGTTTGGACAAGTCTTTCGTTGATGCAGGCTACACCAGTTCGCGCAAAGTGAACTGCATTGGTGCCCTCGAACTACGACTTGTTCGGAGAGGAACATTCCAGAAGATTCTTGATCATTACCTAGGACTAGGAACCGCTGTTAGTCAGTACAAGACACCAAGATGTGTTGGTCCTACAAACACCAGAGTGTTGCAAATCTTGAGTGAAAATGTTGTCAACAACTATCTCAGTACCGCTTTCAATTGA

>Glyma03g41700.2   sequence type=CDS   gene model=Glyma03g41700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGAGAAAGTGGAGGAGTTTAACATGGATAAAGTTATACAAGAGTTTGAATTATTGACAAGGGATGCAGAAAGAGTTCAGAGGGAAACACTCAAGAGGATTTTGGAGGATAACGCATCAGCAGAGTACTTGCAGAGTTTGGGTCTCAATGGAAGAACTGACCCTGAGAGTTTCAAGGCCTGTGTTCCAATGGTCACCCACAAAGAATTGGAACCTTATATCTACAGAATTATTGATGGTGATGCTTCTCCTATTCTCACTGGAAAACCCATCACAACCATGTCCTTAAGTTCTGGCACTACCCAGGGGAAACCAAAGTATGTACCTTGGAATGATGAATTGTATGAAACCACAATGCAGATATACCAGACCTCTTTTGCCTTTAGAAACAGGGAGTTTCCTATAAAAAATGGGAAGGCTTTAAGCTTTATATACGGTAGCAAACAGTTGAAAACAAAGGGGGGTCTGGCGGCTAGAACTGCCACAAGCAACGTGTTCTGTAGTGCTGGTTACAAGTGTGCAATGAGGGCACTCCAATCCCAATGCTGCAGCCCGGATGAAGTGATATTTGGTCCTGATTTTTTCCAATCACTGTACTGCCATCTGCTGTGTGGTCTGATTTTCCGGGAGGAAGTTGAGTTTGTATCTTCCACATTTGCACATAGCATTGTCCATGCTTTTAGAACCTTTGAACAAGTGTGGGAAGAGCTGTGCAATGATATCAGAGAAGGGGTTCTCACCAGAAATGTCACCGTTCCTTCCATTCGAATGGCCATGTCTAAACTGCTCAAACCAAACCCTGAATTAGCAAACGCGATCCACAAAAAATGCACGGGATTGAGCAACTGGTACGGGTTGATACCGGAGCTTTTTCCCAATGCAAAGTATATTTATGGCATCATGACCGGGTCGATGGAACCTTATTTGAAAAAAATGAGACATTATGCCGGGGAGCTGCCTTTGTTGACTGCTGACTATGGATCCTCTGAGGGATGGATAGCAGCAAATGTGAACCCACAACTTCCTCCCGAGTATGCCACTTATGCCGTGCTTCCTCACATTGGTTACTTTGAATTCATTCCTCTCTTAGAGCTTGAGAACACCAAGCCTCTGGGCCTGACTCAAGTCAAGGTTGGTCAAGAGTATGAAATTGTTATGACAAATCCAGCAGGTTTATACCGTTATAGATTGGGGGATGTGGTGAAGGTTATGGGATTCCACAATTCAACTCCAGAACTCAAGTTTATTCGAAGGAGCAGTCTTCTGCTCAACATTAACATCGACAAGAACACTGAGAAGGATTTACAATTAGCCGTGGAAGCTGCAGGGAAGTTGCTAGCAGAGGAGAAACTGGAAGTAGTTGACTTCAGTAGCCAGGTTGATTTATCCAAAGAACCAGGGCACTATGTCATCTTCTGGGAAATCAGCGGAGACGCGAGCCAAGAACTACTCCATGAATGCTGTAACTGTTTGGACAAGTCTTTCGTTGATGCAGGCTACACCAGTTCGCGCAAAGTGAACTGCATTGGTGCCCTCGAACTACGACTTGTTCGGAGAGGAACATTCCAGAAGATTCTTGATCATTACCTAGGACTAGGAACCGCTGTTAGTCAGTACAAGACACCAAGATGTGTTGGTCCTACAAACACCAGAGTGTTGCAAATCTTGAGTGAAAATGTTGTCAACAACTATCTCAGTACCGCTTTCAATTGA
Predicted protein sequences of Glyma03g41700
>Glyma03g41700.1   sequence type=predicted peptide   gene model=Glyma03g41700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEKVEEFNMDKVIQEFELLTRDAERVQRETLKRILEDNASAEYLQSLGLNGRTDPESFKACVPMVTHKELEPYIYRIIDGDASPILTGKPITTMSLSSGTTQGKPKYVPWNDELYETTMQIYQTSFAFRNREFPIKNGKALSFIYGSKQLKTKGGLAARTATSNVFCSAGYKCAMRALQSQCCSPDEVIFGPDFFQSLYCHLLCGLIFREEVEFVSSTFAHSIVHAFRTFEQVWEELCNDIREGVLTRNVTVPSIRMAMSKLLKPNPELANAIHKKCTGLSNWYGLIPELFPNAKYIYGIMTGSMEPYLKKMRHYAGELPLLTADYGSSEGWIAANVNPQLPPEYATYAVLPHIGYFEFIPLLELENTKPLGLTQVKVGQEYEIVMTNPAGLYRYRLGDVVKVMGFHNSTPELKFIRRSSLLLNINIDKNTEKDLQLAVEAAGKLLAEEKLEVVDFSSQVDLSKEPGHYVIFWEISGDASQELLHECCNCLDKSFVDAGYTSSRKVNCIGALELRLVRRGTFQKILDHYLGLGTAVSQYKTPRCVGPTNTRVLQILSENVVNNYLSTAFN*

>Glyma03g41700.2   sequence type=predicted peptide   gene model=Glyma03g41700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEKVEEFNMDKVIQEFELLTRDAERVQRETLKRILEDNASAEYLQSLGLNGRTDPESFKACVPMVTHKELEPYIYRIIDGDASPILTGKPITTMSLSSGTTQGKPKYVPWNDELYETTMQIYQTSFAFRNREFPIKNGKALSFIYGSKQLKTKGGLAARTATSNVFCSAGYKCAMRALQSQCCSPDEVIFGPDFFQSLYCHLLCGLIFREEVEFVSSTFAHSIVHAFRTFEQVWEELCNDIREGVLTRNVTVPSIRMAMSKLLKPNPELANAIHKKCTGLSNWYGLIPELFPNAKYIYGIMTGSMEPYLKKMRHYAGELPLLTADYGSSEGWIAANVNPQLPPEYATYAVLPHIGYFEFIPLLELENTKPLGLTQVKVGQEYEIVMTNPAGLYRYRLGDVVKVMGFHNSTPELKFIRRSSLLLNINIDKNTEKDLQLAVEAAGKLLAEEKLEVVDFSSQVDLSKEPGHYVIFWEISGDASQELLHECCNCLDKSFVDAGYTSSRKVNCIGALELRLVRRGTFQKILDHYLGLGTAVSQYKTPRCVGPTNTRVLQILSENVVNNYLSTAFN*






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