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Report for Sequence Feature Glyma03g41660

Feature Type:gene_model
Chromosome:Gm03
Start:47065951
stop:47067349
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g41660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61640AT Annotation by Michelle Graham. TAIR10: arabinogalactan protein 20 | chr3:22810283-22810629 REVERSE LENGTH=74 SoyBaseE_val: 4.00E-21ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009612GO-bp Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
PF06376PFAM Protein of unknown function (DUF1070) JGI ISS
UniRef100_I1JRX8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRX8_SOYBN SoyBaseE_val: 4.00E-44ISS
UniRef100_Q9M373UniRef Annotation by Michelle Graham. Most informative UniRef hit: Arabinogalactan peptide 20 n=1 Tax=Arabidopsis thaliana RepID=AGP20_ARATH SoyBaseE_val: 2.00E-18ISS

Expression Patterns of Glyma03g41660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g41660 not represented in the dataset
Glyma03g41660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g41660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g255700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g41660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g41660
>Glyma03g41660.1   sequence type=CDS   gene model=Glyma03g41660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTCTCAGAGCAGCTTCTGAAGTTTTGGCAATCTATACCCTTGTCTTTACCATTTTTTCACCTGCTGTTCTTGAAGCACAGTCTCTTTCCCTTGCAGCTGCTCCTGCTCCTTCCAGAGATGGTACTTCAATAGACCAAGGAATTGCATACGTATTGATGGTTGTGGCGCTGGTGCTCACGTACCTCATCCACCCCTTTGACGCGTCTTCCCATCACTTCTGA
Predicted protein sequences of Glyma03g41660
>Glyma03g41660.1   sequence type=predicted peptide   gene model=Glyma03g41660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFLRAASEVLAIYTLVFTIFSPAVLEAQSLSLAAAPAPSRDGTSIDQGIAYVLMVVALVLTYLIHPFDASSHHF*






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