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Report for Sequence Feature Glyma03g41520

Feature Type:gene_model
Chromosome:Gm03
Start:46950548
stop:46951293
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g41520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01200AT Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr4:506783-507535 REVERSE LENGTH=250 SoyBaseE_val: 1.00E-63ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00168PFAM C2 domain JGI ISS
UniRef100_E5GCH5UniRef Annotation by Michelle Graham. Most informative UniRef hit: C2 domain-containing protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCH5_CUCME SoyBaseE_val: 1.00E-64ISS
UniRef100_UPI00023378BBUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023378BB related cluster n=1 Tax=unknown RepID=UPI00023378BB SoyBaseE_val: 1.00E-176ISS

Expression Patterns of Glyma03g41520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41520
ParalogEvidenceComments
Glyma19g44120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g254400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g41520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g41520
>Glyma03g41520.2   sequence type=CDS   gene model=Glyma03g41520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTCGGCGGCGAAGATTCACCAAGTATTGGAGATCAACTTGATCTCTGCGCAGGGCATGAAGCCGCCTTCGTCTCCACGGCGGAGGCTCCAAACCTACGCCGTCACGTGGATCGACCCCGCCACCAAGCTCCGAACACGCGTCGACAAGCTCGGCGGCCACAACCCTACCTGGAACGACAAGTTCCTCTTCGGCGTCACAAAGGACTTTCTCGCCGGCGACACCTCCAGCGTCTGCGTCGCCATCTACGCCGTCGGCACCTTCCGCCACCACCTTGTCGGCACCGTGCGCTTCCTCATCAGCAACATGTTCTCCCCCGACGCCGACGACGCCACGCCCTGCTTCAGCGCCTTCCAGATCCGGCGCCCGTCGGGGAGGTTCCACGGGGTCATGAACATCGGCGCCATGGTGATGGACGGCTCCGGCTTCCCCGCGCTGGAGAAGATCTCAGCGCTAGGCTACCGCGACCTCATGGGAGAGAAGATACACCAGCGCCGGAGGAGAAACCGAAGGAAGAGGAAATGCTGTCGAGAAGGGGAAGGGGAGTCTTGGACGGCGTCGTCTTCGTCGTCGCCGAGAACGACGGCGGCGTTGAAGGATTGGAACGGATTGAGGGAATTGGCGGGAAATAAAGGGTTGGCAATGTCGGCTTCGGGATTCTTGTGCTGTTTGGTAACTCAAAGAAGTGTTCACCAACCCATCATCACACTCTAA
Predicted protein sequences of Glyma03g41520
>Glyma03g41520.2   sequence type=predicted peptide   gene model=Glyma03g41520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSAAKIHQVLEINLISAQGMKPPSSPRRRLQTYAVTWIDPATKLRTRVDKLGGHNPTWNDKFLFGVTKDFLAGDTSSVCVAIYAVGTFRHHLVGTVRFLISNMFSPDADDATPCFSAFQIRRPSGRFHGVMNIGAMVMDGSGFPALEKISALGYRDLMGEKIHQRRRRNRRKRKCCREGEGESWTASSSSSPRTTAALKDWNGLRELAGNKGLAMSASGFLCCLVTQRSVHQPIITL*






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