Glyma03g41430 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g41430

Feature Type:	gene_model
Chromosome:	Gm03
Start:	46910347
stop:	46913595
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g41430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42960	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr2:17868597-17870630 REVERSE LENGTH=494	SoyBase	E_val: 1.00E-60	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7L302	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Wall-associated receptor kinase-like protein n=1 Tax=Medicago truncatula RepID=G7L302_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023378B5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023378B5 related cluster n=1 Tax=unknown RepID=UPI00023378B5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g41430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41430

Paralog	Evidence	Comments
Glyma19g44016	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g253600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g41430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g41430

Limit To All Plant Sequences

>Glyma03g41430.3   sequence type=transcript   gene model=Glyma03g41430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAATTAGATTAGACCATACAATATAATAGAGTTTGAGTAGTTTGCACCAACTTACTGGTGCTGTGGTGCAGGTACATGTGTGCTGAAGTTCAACACGTCCCAATATGTGGCATTTGGTGAGTGCGGCGATGTGAATGAGGTTTTAGACAAGTGGGGTGACGATGGGTTCCCGACAACCTTGTGCTGTCGAAATGCTCTGACGGTTTTGTCGAATGCGTTGGCATCGCAACCCCTGAACTCAGGAGGACAAGTGTTCATTTCCCAAGATTAGTCGCAGAGTTGTGCCAAGACATTTCACCCGCAGCAAGGAATGTCCCTTAATTCATGCGGCTTTCAAAGCTTGTACCTTGGCAGTTCCAAATGCTCCAACCTCGTTTTCCAGGATGTTAGGAAACTGCAACAGTACCAAGATGCATTAGACAAGTGCTCCAACTTCGACCACCCATTTGGTGAATCTTGTGCAGATTGCACCGGTGCAATATTAAGCTTAAGAGATAGTTTATATAATCAAGTGACCAACAACAACAACAACCACACTGAGGTAGCCATATGTGCGGTAGCAGCTATTGTTGCTGTTGCAGCTGGGAAACCAAATGATCCTGCCGTTGACAAAGTCTTACGCTGCTTGCCACCTTCAGCTTCTGGATCAGACAAGAGTATTCAGCTCCATCTCCACCATTTTATTTTTTTTATTTTTTTCAAGTTCTAAACATTTTTGTTTTAGAATTGAGCCAAATGAAACTGACAAAAAAAATGTCAATTTTCGGGTCCCCAGGATCATTGTGGAAATCCTTGTTGAGTGTGCCGGTAGTTATCCTTGCAATATTGCTTGTGGTTATAATGGTAAAACGTTTGTCCAAGAAGAAGCTTCGTAGACAGGCAAACTTGAAAGAGATCGCTGCGTGGTCTGGATTGTACTGGTTCTGCAAAAGGGAAATTGAGAATGCCATGAATTATGGCGGTGAAAAGATATGCCTTGGACGTGGGAGTGCAGGGCAGGTGTATAGAGGTATTCTCCCAAGTGGTCAACTCGTGGCCATCAAGCATTTAACAAAGAGTAACACCTCTGAGTCTTTCACTCGAGAAGTTGAAGGTCTTTCAAGGCTTCGCCATCCTAACCTGGTTTGCCTCTTTGGATGCTGCATAGAAGGGGATGAGAGATATTTAGTCTATGAATTCTGTGCAAACGGGAATCTTGCTCAACATCTCTTAAGAAGAGATAGCCACTTGACATGGGAAACCAGAGTAAGAATTTTGAGAGATTGTTCATATGCACTCAAGTACCTCCACCATCATATAGAAGGCTGTGTTGTCCATAGAGATATAAAGCTTACGAACATTCTTTTGAATGAGAAATACCAAGCGAAACTGTCAGATTTTGGACTGGCAAAAGTGATGGGGATTAAAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACAATAGGCTACATGGATCCAGAGTACATGAGTAATGCCAAGCTAACCTGCGCTAGCGATGTTTACAGTTTTGGTATTGTTGCTCTACAAATTCTGTCGGGACAGAAAGTCATCGAGTTGGATCTTGATGCCAGAGATCAACTCACTAGGAAGGCAAGAGATGTGAGCATGGGAAAGCGTCCACTGTCAGATTTTGAAGACCCGCGACTAAATGGAAAAGTTGATAAGACAGACTTCGAAGCCATCCTTCAGATTGCAGTTTTGTGTGTTGCCAAATCAAGCAAAGGTCGTCCAACCATTGAGCTTGTTTTTGAGGAATTGGACAAGGTCTGCAGGGATACAGAAACACGGATGAAGCAAAAGAAGGATGAGAGCTTATCAACAACATCCACCCCGAGCTCCAAATCGTCAAAATCGGCGCCTCTATGACATAAAGGATAATGCGCTGGTTGTTACATACGAGTGTGAGATGAAACTTGAAGATGTAGTGTAAATTGAAATTAGAAGATGAAGATATACATTACATCTAATAAATTGTTCACAGCATATAACTATTACGACGGCACAAAATTAGGAGTGTGGCGTACATACAAAAATTTCCCTTATGGCTCTCTCTCGGTCAGAGATCTGGAATCCTCCTACAAAAGCTGTTCTGCTGGTCCAACAAAATGATTCATGTGGCGGCAAAAGAAACAAAATTATTCTAGCAATCATCAATATCTTTAATATTTAAGCGTGTTATAGGCTTGTAGCAATAGCAATTTAAATCCACAGCTTCTCTCTTATTTTTACCCGTTTTTAATTTTATTATGGCATCTTTCAGGTTCCACAATAATGTAAATTTGGATATTCAATAATGAATGGAACGCAACGGAATAAATACGAATCGGATAATCTGTTTGATTATCCTGGTGTGTATTTCC

Coding sequences of Glyma03g41430

Limit To All Plant Sequences

>Glyma03g41430.2   sequence type=CDS   gene model=Glyma03g41430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCTTAATTCATGCGGCTTTCAAAGCTTGTACCTTGGCAGTTCCAAATGCTCCAACCTCGTTTTCCAGGATGTTAGGAAACTGCAACAGTACCAAGATGCATTAGACAAGTGCTCCAACTTCGACCACCCATTTGGTGAATCTTGTGCAGATTGCACCGGTGCAATATTAAGCTTAAGAGATAGTTTATATAATCAAGTGACCAACAACAACAACAACCACACTGAGGTAGCCATATGTGCGGTAGCAGCTATTGTTGCTGTTGCAGCTGGGAAACCAAATGATCCTGCCGTTGACAAAGTCTTACGCTGCTTGCCACCTTCAGCTTCTGGATCAGACAAGAGATCATTGTGGAAATCCTTGTTGAGTGTGCCGGTAGTTATCCTTGCAATATTGCTTGTGGTTATAATGGTAAAACGTTTGTCCAAGAAGAAGCTTCGTAGACAGGCAAACTTGAAAGAGATCGCTGCGTGGTCTGGATTGTACTGGTTCTGCAAAAGGGAAATTGAGAATGCCATGAATTATGGCGGTGAAAAGATATGCCTTGGACGTGGGAGTGCAGGGCAGGTGTATAGAGGTATTCTCCCAAGTGGTCAACTCGTGGCCATCAAGCATTTAACAAAGAGTAACACCTCTGAGTCTTTCACTCGAGAAGTTGAAGGTCTTTCAAGGCTTCGCCATCCTAACCTGGTTTGCCTCTTTGGATGCTGCATAGAAGGGGATGAGAGATATTTAGTCTATGAATTCTGTGCAAACGGGAATCTTGCTCAACATCTCTTAAGAAGAGATAGCCACTTGACATGGGAAACCAGAGTAAGAATTTTGAGAGATTGTTCATATGCACTCAAGTACCTCCACCATCATATAGAAGGCTGTGTTGTCCATAGAGATATAAAGCTTACGAACATTCTTTTGAATGAGAAATACCAAGCGAAACTGTCAGATTTTGGACTGGCAAAAGTGATGGGGATTAAAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACAATAGGCTACATGGATCCAGAGTACATGAGTAATGCCAAGCTAACCTGCGCTAGCGATGTTTACAGTTTTGGTATTGTTGCTCTACAAATTCTGTCGGGACAGAAAGTCATCGAGTTGGATCTTGATGCCAGAGATCAACTCACTAGGAAGGCAAGAGATGTGAGCATGGGAAAGCGTCCACTGTCAGATTTTGAAGACCCGCGACTAAATGGAAAAGTTGATAAGACAGACTTCGAAGCCATCCTTCAGATTGCAGTTTTGTGTGTTGCCAAATCAAGCAAAGGTCGTCCAACCATTGAGCTTGTTTTTGAGGAATTGGACAAGGTCTGCAGGGATACAGAAACACGGATGAAGCAAAAGAAGGATGAGAGCTTATCAACAACATCCACCCCGAGCTCCAAATCGTCAAAATCGGCGCCTCTATGA

>Glyma03g41430.3   sequence type=CDS   gene model=Glyma03g41430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACTGACAAAAAAAATGTCAATTTTCGGGTCCCCAGGATCATTGTGGAAATCCTTGTTGAGTGTGCCGGTAGTTATCCTTGCAATATTGCTTGTGGTTATAATGGTAAAACGTTTGTCCAAGAAGAAGCTTCGTAGACAGGCAAACTTGAAAGAGATCGCTGCGTGGTCTGGATTGTACTGGTTCTGCAAAAGGGAAATTGAGAATGCCATGAATTATGGCGGTGAAAAGATATGCCTTGGACGTGGGAGTGCAGGGCAGGTGTATAGAGGTATTCTCCCAAGTGGTCAACTCGTGGCCATCAAGCATTTAACAAAGAGTAACACCTCTGAGTCTTTCACTCGAGAAGTTGAAGGTCTTTCAAGGCTTCGCCATCCTAACCTGGTTTGCCTCTTTGGATGCTGCATAGAAGGGGATGAGAGATATTTAGTCTATGAATTCTGTGCAAACGGGAATCTTGCTCAACATCTCTTAAGAAGAGATAGCCACTTGACATGGGAAACCAGAGTAAGAATTTTGAGAGATTGTTCATATGCACTCAAGTACCTCCACCATCATATAGAAGGCTGTGTTGTCCATAGAGATATAAAGCTTACGAACATTCTTTTGAATGAGAAATACCAAGCGAAACTGTCAGATTTTGGACTGGCAAAAGTGATGGGGATTAAAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACAATAGGCTACATGGATCCAGAGTACATGAGTAATGCCAAGCTAACCTGCGCTAGCGATGTTTACAGTTTTGGTATTGTTGCTCTACAAATTCTGTCGGGACAGAAAGTCATCGAGTTGGATCTTGATGCCAGAGATCAACTCACTAGGAAGGCAAGAGATGTGAGCATGGGAAAGCGTCCACTGTCAGATTTTGAAGACCCGCGACTAAATGGAAAAGTTGATAAGACAGACTTCGAAGCCATCCTTCAGATTGCAGTTTTGTGTGTTGCCAAATCAAGCAAAGGTCGTCCAACCATTGAGCTTGTTTTTGAGGAATTGGACAAGGTCTGCAGGGATACAGAAACACGGATGAAGCAAAAGAAGGATGAGAGCTTATCAACAACATCCACCCCGAGCTCCAAATCGTCAAAATCGGCGCCTCTATGA

Predicted protein sequences of Glyma03g41430

Limit To All Plant Sequences

>Glyma03g41430.2   sequence type=predicted peptide   gene model=Glyma03g41430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLNSCGFQSLYLGSSKCSNLVFQDVRKLQQYQDALDKCSNFDHPFGESCADCTGAILSLRDSLYNQVTNNNNNHTEVAICAVAAIVAVAAGKPNDPAVDKVLRCLPPSASGSDKRSLWKSLLSVPVVILAILLVVIMVKRLSKKKLRRQANLKEIAAWSGLYWFCKREIENAMNYGGEKICLGRGSAGQVYRGILPSGQLVAIKHLTKSNTSESFTREVEGLSRLRHPNLVCLFGCCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSYALKYLHHHIEGCVVHRDIKLTNILLNEKYQAKLSDFGLAKVMGIKESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLNGKVDKTDFEAILQIAVLCVAKSSKGRPTIELVFEELDKVCRDTETRMKQKKDESLSTTSTPSSKSSKSAPL*

>Glyma03g41430.3   sequence type=predicted peptide   gene model=Glyma03g41430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLTKKMSIFGSPGSLWKSLLSVPVVILAILLVVIMVKRLSKKKLRRQANLKEIAAWSGLYWFCKREIENAMNYGGEKICLGRGSAGQVYRGILPSGQLVAIKHLTKSNTSESFTREVEGLSRLRHPNLVCLFGCCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSYALKYLHHHIEGCVVHRDIKLTNILLNEKYQAKLSDFGLAKVMGIKESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLNGKVDKTDFEAILQIAVLCVAKSSKGRPTIELVFEELDKVCRDTETRMKQKKDESLSTTSTPSSKSSKSAPL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain