Glyma03g41310 - SoyBase

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Report for Sequence Feature Glyma03g41310

Feature Type:	gene_model
Chromosome:	Gm03
Start:	46820501
stop:	46825751
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g41310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04290	AT	Annotation by Michelle Graham. TAIR10: Li-tolerant lipase 1 \| chr3:1133620-1136223 REVERSE LENGTH=366	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0010226	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to lithium ion	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR22835	Panther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22835:SF39	Panther	LATERAL SIGNALING TARGET PROTEIN 2	JGI		ISS
PF00657	PFAM	GDSL-like Lipase/Acylhydrolase	JGI		ISS
UniRef100_G7L2Y6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7L2Y6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JRU3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JRU3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g41310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41310

Paralog	Evidence	Comments
Glyma19g43920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g252500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g41310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g41310

Limit To All Plant Sequences

>Glyma03g41310.1   sequence type=CDS   gene model=Glyma03g41310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCGAAAACAATCCAGCAAGGGTTTTTGGTTCTTCTATGTTTCTATGTTTGCTTGTGTTGATCACTTGGAACAACATTGTTGTTGTTGTTCCACAAGCTGAGGCTCGAGCATTCTTTGTTTTTGGTGATTCGCTAGTTGACAATGGCAACAATAACTACCTATTCACCACTGCTCGTGCCGACTCATATCCTTATGGAATTGACTATCCCACTCACAGGGCCACTGGCCGTTTCTCTAATGGCCTCAATATCCCGGACATTATCAGTGAGAAAATTGGGTCAGAACCCACACTGCCGTATCTAAGTCGCGAGCTCGATGGAGAGAGGCTACTCGTTGGTGCCAATTTTGCTTCTGCTGGGATAGGAATTCTCAATGACACTGGAATTCAGTTTATAAACATAATCCGAATCAGCAGGCAATTACAGTACTTTGAGCAGTATCAACAAAGGGTGAGTGCACTAATTGGACCAGAGCAGACTCAACGACTGGTCAACCAAGCACTAGTACTCATAACCTTAGGTGGCAATGATTTTGTCAACAACTATTACTTGGTGCCATTCTCTGCAAGATCACGCCAATTTGCACTTCCAAACTATGTTGTATACCTTATTTCCGAGTATCGCAAAATTCTTGTGAGGCTTTATGAGTTGGGAGCAAGGCGAGTTTTGGTGACTGGAACGGGACCTTTAGGTTGCGTGCCTGCAGAACTGGCGCAGCGTAGCAGAAATGGGGAGTGTGCAGCAGAGCTGCAAGAAGCTTCTGCTTTGTTCAATCCACAACTCGTTCAGTTGGTGAATCAACTCAACTCTGAAATTGGTTCGGTTGTCTTCATTTCAGCCAATGCTTTCGAATCCAATATGGATTTTATTAGTAACCCACAAGCGTACGGTTTTATCACATCAAAAGTTGCATGCTGTGGTCAAGGACCTTACAATGGGATTGGACTGTGTACTCCGGCGTCTAACCTGTGCCCAAACAGAGATGTATTTGCATTTTGGGACCCCTTCCATCCAAGTGAGAGAGCAAACAGATTGATTGTGGACACATTCATGATTGGAGACTCCAAATACATGCACCCAATGAATCTCAGTACCGTGTTGCTTTTGGATGCAACTTCAAGGACCTAG

Predicted protein sequences of Glyma03g41310

Limit To All Plant Sequences

>Glyma03g41310.1   sequence type=predicted peptide   gene model=Glyma03g41310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVENNPARVFGSSMFLCLLVLITWNNIVVVVPQAEARAFFVFGDSLVDNGNNNYLFTTARADSYPYGIDYPTHRATGRFSNGLNIPDIISEKIGSEPTLPYLSRELDGERLLVGANFASAGIGILNDTGIQFINIIRISRQLQYFEQYQQRVSALIGPEQTQRLVNQALVLITLGGNDFVNNYYLVPFSARSRQFALPNYVVYLISEYRKILVRLYELGARRVLVTGTGPLGCVPAELAQRSRNGECAAELQEASALFNPQLVQLVNQLNSEIGSVVFISANAFESNMDFISNPQAYGFITSKVACCGQGPYNGIGLCTPASNLCPNRDVFAFWDPFHPSERANRLIVDTFMIGDSKYMHPMNLSTVLLLDATSRT*

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