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Report for Sequence Feature Glyma03g41230
Feature Type: gene_model
Chromosome: Gm03
Start: 46745325
stop: 46751328
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g41230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G04590 AT
Annotation by Michelle Graham. TAIR10: AT hook motif DNA-binding family protein | chr3:1239245-1241603 REVERSE LENGTH=411
SoyBase E_val: 9.00E-85 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
PF03479 PFAM
Domain of unknown function (DUF296)
JGI ISS
UniRef100_G7I670 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: SAP1 protein n=1 Tax=Medicago truncatula RepID=G7I670_MEDTR
SoyBase E_val: 3.00E-114 ISS
UniRef100_I1JRT6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRT6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g41230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma03g41230
Paralog Evidence Comments
Glyma19g43850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g41230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g251800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g41230
Transcripts of Glyma03g41230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g41230.2 sequence type=transcript gene model=Glyma03g41230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TAAGAGAGTGAGACTCCAAATCAGAGGCTTCAGTTCAGACTCGGGACCCTGCCCTTCTTCCAAGATAAAGTGTTTTTGTTTTCATTATAAAAATAAATTAAAAATATCTTTTAAAAAAATTGCAGTGGCAGCACACACATCTTTGTGTTTCAAAAATGGAACCTAATGACAACCAACTCACCTCTTTCTTCCACCACCACCACCAACAGCACCAACACCACCAGCCGCCGCCACCACCGCAGACCACGGCGTCTCCGACCAACGGGCTCTTGCCGAACGCGGATGGGTCCCACATACTTTACCCCCACTCTGTGGCGTCCGCTGTTTCGTCGCAGCTTGAACCGGCGAAGCGGAAGCGCGGGCGGCCGAGGAAGTACGGAACGCCGGAGCAAGCTCTGGCCGCGAAGAAAGCCGCTACGACGTTGTCTCATTCGTTCTCTGTGGACAAGAAGCCCCACTCCCCGACGTTCCCTTCCTCCAAGAAATCCCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTCATTTCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTTATGCAACAAAGTAGGCGTGAGATGTGTATTCTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAGCATTGCATATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCTTATGTCCGTAATGAACTTGGAACTCGAACTGGTGGTCTCAGTGTATGCTTATCTAATACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTCTTTATTGACAACAAGAAGGATACTGGTGCTGGTGTTAAAGGTGACATCTCTGCCAGCAAGTTGCCATCTCCAGTTGGTGAACCGGTATCAAGTTTAGGTTTCCGCCAATCAGTTGACTCTCCCAGTGGTAATCCAATCCGGGGAAATGATGAGCATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGGGACGCCTCCCCGGTCCACAGACTGGGGTCATCCGGATTCAAGAAATACTGGTTTTGAGTTGACAGGTCATGGGGCGCACCAGTCTCCTGAGAATGGAGGCTATGAACAAATTCCCGATTGAAGAACCAAGATGGCTTTTGGATTTGATAGCAGTGATGAATTTGCGGTAGATGTATGATATCTCTACATACCACCAGTCTTTGTCACGTGATGCTGTTTATAGTATGCACCATTCATTAAGGATCGCGGCTTCTGAAAATTAATACTCGTGCATCTCCTTGAAAATATTGTTCTGCCTCGTTTACTGATGTTGTATTTATAAATCACTAAATCAGGGCTGCTTCATTTTTGCGGGCCTGTTAGTTTATACCGGGATAAATATAATAGATATATGCTTCCTAGATTAGCTAATCTATTGTGGACTATATTTTCCTTCCATTTTCAAGGTGCAGTCTTAATATTGTTCAAAATTCTATCAAGCATATATTATTATGGTTCTTAATTTATAAGCTTATTCGGAAA
Coding sequences of Glyma03g41230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g41230.1 sequence type=CDS gene model=Glyma03g41230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAACCTAATGACAACCAACTCACCTCTTTCTTCCACCACCACCACCAACAGCACCAACACCACCAGCCGCCGCCACCACCGCAGACCACGGCGTCTCCGACCAACGGGCTCTTGCCGAACGCGGATGGGTCCCACATACTTTACCCCCACTCTGTGGCGTCCGCTGTTTCGTCGCAGCTTGAACCGGCGAAGCGGAAGCGCGGGCGGCCGAGGAAGTACGGAACGCCGGAGCAAGCTCTGGCCGCGAAGAAAGCCGCTACGACGTTGTCTCATTCGTTCTCTGTGGACAAGAAGCCCCACTCCCCGACGTTCCCTTCCTCCAAGAAATCCCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTCATTTCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTTATGCAACAAAGTAGGCGTGAGATGTGTATTCTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAGCATTGCATATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCTTATGTCCGTAATGAACTTGGAACTCGAACTGGTGGTCTCAGTGTATGCTTATCTAATACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTCTTTATTGACAACAAGAAGGATACTGGTGCTGGTGTTAAAGGTGACATCTCTGCCAGCAAGTTGCCATCTCCAGTTGGTGAACCGGTATCAAGTTTAGGTTTCCGCCAATCAGTTGACTCTCCCAGTGGTAATCCAATCCGGGGAAATGATGAGCATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGGGACGCCTCCCCGGTCCACAGACTGGGGTCATCCGGATTCAAGAAATACTGGTTTTGAGTTGACAGGAAGGATAGGTCATGGGGCGCACCAGTCTCCTGAGAATGGAGGCTATGAACAAATTCCCGATTGA
>Glyma03g41230.2 sequence type=CDS gene model=Glyma03g41230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAACCTAATGACAACCAACTCACCTCTTTCTTCCACCACCACCACCAACAGCACCAACACCACCAGCCGCCGCCACCACCGCAGACCACGGCGTCTCCGACCAACGGGCTCTTGCCGAACGCGGATGGGTCCCACATACTTTACCCCCACTCTGTGGCGTCCGCTGTTTCGTCGCAGCTTGAACCGGCGAAGCGGAAGCGCGGGCGGCCGAGGAAGTACGGAACGCCGGAGCAAGCTCTGGCCGCGAAGAAAGCCGCTACGACGTTGTCTCATTCGTTCTCTGTGGACAAGAAGCCCCACTCCCCGACGTTCCCTTCCTCCAAGAAATCCCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTCATTTCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTTATGCAACAAAGTAGGCGTGAGATGTGTATTCTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAGCATTGCATATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCTTATGTCCGTAATGAACTTGGAACTCGAACTGGTGGTCTCAGTGTATGCTTATCTAATACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTCTTTATTGACAACAAGAAGGATACTGGTGCTGGTGTTAAAGGTGACATCTCTGCCAGCAAGTTGCCATCTCCAGTTGGTGAACCGGTATCAAGTTTAGGTTTCCGCCAATCAGTTGACTCTCCCAGTGGTAATCCAATCCGGGGAAATGATGAGCATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGGGACGCCTCCCCGGTCCACAGACTGGGGTCATCCGGATTCAAGAAATACTGGTTTTGAGTTGACAGGTCATGGGGCGCACCAGTCTCCTGAGAATGGAGGCTATGAACAAATTCCCGATTGA
Predicted protein sequences of Glyma03g41230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g41230.1 sequence type=predicted peptide gene model=Glyma03g41230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEPNDNQLTSFFHHHHQQHQHHQPPPPPQTTASPTNGLLPNADGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATTLSHSFSVDKKPHSPTFPSSKKSHSFALGNAGQGFTPHVISVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGSIAYEGRFEIISLTGSYVRNELGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDTGAGVKGDISASKLPSPVGEPVSSLGFRQSVDSPSGNPIRGNDEHQAMGGSHFMIQQLGLHGTPPRSTDWGHPDSRNTGFELTGRIGHGAHQSPENGGYEQIPD*
>Glyma03g41230.2 sequence type=predicted peptide gene model=Glyma03g41230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEPNDNQLTSFFHHHHQQHQHHQPPPPPQTTASPTNGLLPNADGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATTLSHSFSVDKKPHSPTFPSSKKSHSFALGNAGQGFTPHVISVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGSIAYEGRFEIISLTGSYVRNELGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDTGAGVKGDISASKLPSPVGEPVSSLGFRQSVDSPSGNPIRGNDEHQAMGGSHFMIQQLGLHGTPPRSTDWGHPDSRNTGFELTGHGAHQSPENGGYEQIPD*