Glyma03g41200 - SoyBase

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Report for Sequence Feature Glyma03g41200

Feature Type:	gene_model
Chromosome:	Gm03
Start:	46724556
stop:	46730266
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g41200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39840	AT	Annotation by Michelle Graham. TAIR10: type one serine/threonine protein phosphatase 4 \| chr2:16627430-16628789 FORWARD LENGTH=321	SoyBase	E_val: 0	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0000164	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein phosphatase type 1 complex	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG0374	KOG	Serine/threonine specific protein phosphatase PP1, catalytic subunit	JGI		ISS
PTHR11668	Panther	SERINE/THREONINE PROTEIN PHOSPHATASE	JGI		ISS
PTHR11668:SF136	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_I1JRT4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Glycine max RepID=I1JRT4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JRT4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Glycine max RepID=I1JRT4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g41200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41200

Paralog	Evidence	Comments
Glyma19g43800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g251500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g41200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g41200

Limit To All Plant Sequences

>Glyma03g41200.5   sequence type=transcript   gene model=Glyma03g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATATACCAAAATAGATGTTTAACCTAATGGCATGAGTATTTTTTCTGTTCATCGAAATTTCGAAACTGCATTCCTTCTTATTGAATAATAAAAAAAAAAGTGACGATCACGAAACAACACCCCTCTGCCCGGAAAATTTGACGATGGCGTTCTTCAGTTGAGGCATGTTATTCGCTGCTCACTCTTCCAACTACTACTGTTGTTCTTCTTCGTCGTCTTGGCCTTCGCATCTTCACAATCACATCCAATAGAGACACGTTGACTTTGCTGGAAGAAGAAGAAGAAGAGAATGGAACAATCGCTTTTGGATGACATAATCAATCGCCTCCTCGAAGTTCCTACCCTACCGGCTAAGCAGGTTCAGCTATCCGAGTCCGAGATCCGTCAACTCTGCGTAGTTTCCAGAGAAATTTTCTTGCAACAACCTAATTTATTGGAGCTCGAAGCACCTATTAAGATTTGTGGTGATGTACATGGGCAATATTCTGATCTTTTAAGGCTTTTTGAGTACGGTGGATTACCTCCTGAAGCCAACTATTTGTTTTTGGGGGATTATGTTGATCGAGGGAAGCAGAGTTTAGAAACAATTTGCCTCCTCCTTGCTTATAAAATAAAATATCCTGAGAACTTTTTCTTGTTAAGGGGAAACCATGAATGTGCTTCTATAAACCGGATATATGGATTTTATGATGAGTGCAAGAGAAGGTTCAATGTAAGGTTATGGAAGACATTTACAGACTGCTTCAATTGCCTGCCTGTGGCAGCCCTTGTCGATGAAAAGATTTTGTGTATGCATGGGGGACTTTCTCCCGACTTAAATAATTTGGACCAAATTAGAAATTTACAGCGGCCCACAGATGTTCCTGATACAGGTTTGCTTTGTGATCTGCTTTGGTCTGACCCGAGCAAAGATGTTCAAGGATGGGGAATGAATGACAGAGGAGTTTCATACACATTTGGTGCTGATAAGGTCTCACAATTTCTTCAGAAACATGATCTTGATCTTGTTTGTCGTGCTCATCAGGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGACAACTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACGCTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAAGCAAAGCTCAATTTTGGAAGTACAACCACTGCTAAGCCTGGAAACTCTCCAGCAGGTGTAAAGGTTGGAAGATATTAGTCCTTCCTGGATGCGAAAGTGTGAAATTAAATTTGGCTAAAAGATTGCTACTACTACGGATCAGCTTGGGCTTGAACTCCTAATGGTTGCAAGAAGGGGAAAATCAAGTTCCATTTCGCCTACTATGATATTTTGGAATTGTAAAATCAAAGAGAACACCATTATGAAGTTTGTAAACCATTGTTTATTATTGGTACAAATTTGCATTTCAAGATGGAGAGCCATAATCTCCTTGTCTTCCTTGTACACTAATAACTGGTATATTTTCTTAACTGTAAGCTTCACAAGCGTAGATGGATACATCCGAATCTGTTGCTGAGAACCATTTAAAAATGCTTATACGATTTGGCATATATGGATGGCAGTTGAGGCTGGTGAAACAGAATGTCGTCAAATCTCTTCGTTTTCTCATTTTGATTGTCTTTTTTGTGTGAGAAATCTTGTTTGATCTGGGACCATCTTCGTTTTATTTAGATTTTTATTTCCTGAAACATGATTTGAGGCATTG

Coding sequences of Glyma03g41200

Limit To All Plant Sequences

>Glyma03g41200.4   sequence type=CDS   gene model=Glyma03g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAATCGCTTTTGGATGACATAATCAATCGCCTCCTCGAAGTTCCTACCCTACCGGCTAAGCAGGTTCAGCTATCCGAGTCCGAGATCCGTCAACTCTGCGTAGTTTCCAGAGAAATTTTCTTGCAACAACCTAATTTATTGGAGCTCGAAGCACCTATTAAGATTTGTGGTGATGTACATGGGCAATATTCTGATCTTTTAAGGCTTTTTGAGTACGGTGGATTACCTCCTGAAGCCAACTATTTGTTTTTGGGGGATTATGTTGATCGAGGGAAGCAGAGTTTAGAAACAATTTGCCTCCTCCTTGCTTATAAAATAAAATATCCTGAGAACTTTTTCTTGTTAAGGGGAAACCATGAATGTGCTTCTATAAACCGGATATATGGATTTTATGATGAGTGCAAGAGAAGGTTCAATGTAAGGTTATGGAAGACATTTACAGACTGCTTCAATTGCCTGCCTGTGGCAGCCCTTGTCGATGAAAAGATTTTGTGTATGCATGGGGGACTTTCTCCCGACTTAAATAATTTGGACCAAATTAGAAATTTACAGCGGCCCACAGATGTTCCTGATACAGGTTTGCTTTGTGATCTGCTTTGGTCTGACCCGAGCAAAGATGTTCAAGGATGGGGAATGAATGACAGAGGAGTTTCATACACATTTGGTGCTGATAAGGTCTCACAATTTCTTCAGAAACATGATCTTGATCTTGTTTGTCGTGCTCATCAGGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGACAACTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACGCTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAAGCAAAGCTCAATTTTGGAAGTACAACCACTGCTAAGCCTGGAAACTCTCCAGCAGGTGTAAAGGTTGGAAGATATTAG

>Glyma03g41200.5   sequence type=CDS   gene model=Glyma03g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAATCGCTTTTGGATGACATAATCAATCGCCTCCTCGAAGTTCCTACCCTACCGGCTAAGCAGGTTCAGCTATCCGAGTCCGAGATCCGTCAACTCTGCGTAGTTTCCAGAGAAATTTTCTTGCAACAACCTAATTTATTGGAGCTCGAAGCACCTATTAAGATTTGTGGTGATGTACATGGGCAATATTCTGATCTTTTAAGGCTTTTTGAGTACGGTGGATTACCTCCTGAAGCCAACTATTTGTTTTTGGGGGATTATGTTGATCGAGGGAAGCAGAGTTTAGAAACAATTTGCCTCCTCCTTGCTTATAAAATAAAATATCCTGAGAACTTTTTCTTGTTAAGGGGAAACCATGAATGTGCTTCTATAAACCGGATATATGGATTTTATGATGAGTGCAAGAGAAGGTTCAATGTAAGGTTATGGAAGACATTTACAGACTGCTTCAATTGCCTGCCTGTGGCAGCCCTTGTCGATGAAAAGATTTTGTGTATGCATGGGGGACTTTCTCCCGACTTAAATAATTTGGACCAAATTAGAAATTTACAGCGGCCCACAGATGTTCCTGATACAGGTTTGCTTTGTGATCTGCTTTGGTCTGACCCGAGCAAAGATGTTCAAGGATGGGGAATGAATGACAGAGGAGTTTCATACACATTTGGTGCTGATAAGGTCTCACAATTTCTTCAGAAACATGATCTTGATCTTGTTTGTCGTGCTCATCAGGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGACAACTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACGCTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAAGCAAAGCTCAATTTTGGAAGTACAACCACTGCTAAGCCTGGAAACTCTCCAGCAGGTGTAAAGGTTGGAAGATATTAG

Predicted protein sequences of Glyma03g41200

Limit To All Plant Sequences

>Glyma03g41200.4   sequence type=predicted peptide   gene model=Glyma03g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQSLLDDIINRLLEVPTLPAKQVQLSESEIRQLCVVSREIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPDLNNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGADKVSQFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKAKLNFGSTTTAKPGNSPAGVKVGRY*

>Glyma03g41200.5   sequence type=predicted peptide   gene model=Glyma03g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQSLLDDIINRLLEVPTLPAKQVQLSESEIRQLCVVSREIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPDLNNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGADKVSQFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKAKLNFGSTTTAKPGNSPAGVKVGRY*

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