SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08630 | AT | Annotation by Michelle Graham. TAIR10: threonine aldolase 1 | chr1:2743948-2745685 REVERSE LENGTH=358 | SoyBase | E_val: 0 | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0006567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: threonine catabolic process | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004793 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: threonine aldolase activity | SoyBase | N/A | ISS |
| GO:0016829 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lyase activity | SoyBase | N/A | ISS |
| GO:0016832 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aldehyde-lyase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG1368 | KOG | Threonine aldolase | JGI | ISS | |
| PTHR10289 | Panther | L-ALLO-THREONINE ALDOLASE | JGI | ISS | |
| PF01212 | PFAM | Beta-eliminating lyase | JGI | ISS | |
| UniRef100_B9S7K5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: L-allo-threonine aldolase, putative n=1 Tax=Ricinus communis RepID=B9S7K5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JRS5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRS5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g41120 not represented in the dataset |
Glyma03g41120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g250800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g41120.1 sequence type=CDS gene model=Glyma03g41120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTACCTAGGATAGTGGATCTTCGGTCAGATACAGTAACCAAGCCAAGTGAAGCAATGCGAGCTGCTATGGCGAGTGCTGAGGTTGATGATGATGTTCTTGGCCGTGACCCCTCTTGTTTTCGGTTAGAGACAGAGATGGCAAAGATATTGGGAAAGGAAGGTGCACTTTTTGTTCCATCAGGCACTATGGCCAACCTTATATCAGTGCTTGTGCATTGTGACATAAGGGGAAGTGAAGTTATTCTGGGAGACAATTCCCACATACACATTTATGAGAATGGCGGCATTGCAACCCTTGGAGGGGTGCATCCAACAACAGTTAGAAACAATGAAGATGGAACCATGGACATTCATTTGATTGAGGCTGCCATCAGAGATCCAAAGGGGGAGCTAGTATATCCAACCACAAGGCTTATTTGCTTGGAAAATACTCATGGAAACTCTGGTGGTAGATGTCTTTCAGTTGAATATACAGACAGAGTAGGAGAGGTTGCTAAAAAACATGGATTGAAGCTTCACATTGATGGAGCCCGAATATTTAATGCATCAGTTGCACTAGGTGTCCCTGTGGATAGGCTTGTTCAAGCAGCTGATTCAGTATCGGTATGTCTATCAAAAGGCCTCGGTGCTCCAGTTGGATCTGTTATTGTTGGTTCCAATAACTTTATCACCAAGGCTAGACGGCTAAGAAAAACATTAGGTGGTGGAATGAGGCAGGTTGGCATCCTTTGTGCTGCGGCACTCGTTGCTTTGCAGGAAAATGTTGGAAAGCTACAAAGTGATCACAATAAAGCTAAACTTTTGGCTGATGGATTAAATGAAATTAAAGGACTGAGAGTGGATATCTCTTCTGTGGAAACCAATATCATATATGTTGAAGTTGAAGAGGGCTCACGAGCTACAGCAGCAAAGCTATGCAAGGACTTGGAAGACTATGGTATCCTTCTTATGCCAATGGGCTCATCAAGATTGAGAATTGTCTTCCACCACCAAATATCGGCTAGTGACGTGCAGTACGCCTTGTCGTGCTTTCAGCAAGCTGTCAATGGAGTTCGAAATGAAAATGGCAACTAG
>Glyma03g41120.1 sequence type=predicted peptide gene model=Glyma03g41120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVPRIVDLRSDTVTKPSEAMRAAMASAEVDDDVLGRDPSCFRLETEMAKILGKEGALFVPSGTMANLISVLVHCDIRGSEVILGDNSHIHIYENGGIATLGGVHPTTVRNNEDGTMDIHLIEAAIRDPKGELVYPTTRLICLENTHGNSGGRCLSVEYTDRVGEVAKKHGLKLHIDGARIFNASVALGVPVDRLVQAADSVSVCLSKGLGAPVGSVIVGSNNFITKARRLRKTLGGGMRQVGILCAAALVALQENVGKLQSDHNKAKLLADGLNEIKGLRVDISSVETNIIYVEVEEGSRATAAKLCKDLEDYGILLMPMGSSRLRIVFHHQISASDVQYALSCFQQAVNGVRNENGN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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