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Report for Sequence Feature Glyma03g41050

Feature Type:gene_model
Chromosome:Gm03
Start:46604867
stop:46608620
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g41050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04460AT Annotation by Michelle Graham. TAIR10: peroxin-12 | chr3:1186641-1189094 FORWARD LENGTH=393 SoyBaseE_val: 0ISS
GO:0006625GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to peroxisome SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0007031GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome organization SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0048598GO-bp Annotation by Michelle Graham. GO Biological Process: embryonic morphogenesis SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0005778GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane SoyBaseN/AISS
GO:0008022GO-mf Annotation by Michelle Graham. GO Molecular Function: protein C-terminus binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG0826 KOG Predicted E3 ubiquitin ligase involved in peroxisome organization JGI ISS
PTHR12888Panther PEROXIN 12 JGI ISS
PF04757PFAM Pex2 / Pex12 amino terminal region JGI ISS
UniRef100_G7IAY3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peroxisome assembly protein n=1 Tax=Medicago truncatula RepID=G7IAY3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JRR9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRR9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g41050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41050
ParalogEvidenceComments
Glyma19g43700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g250100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g41050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g41050
>Glyma03g41050.1   sequence type=CDS   gene model=Glyma03g41050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTTCAGGTGGGCGGGCAAGGCAGTCGCCCCACCTTCTTCGAGATGGCGGCGGCTCAACAACTGCCGGCGAGCCTCCGCGCCGCTTTGACATACTCCATCGGCGTCTTGGCCTTACGGAGACCCTTCCTTCACAAACTCCTCGACTTCGAAGACGAATCCTTCGCCTTACTCATGCTCGTCCTCGAATCCCACACCTTACGAACCACAGATGCTTCCTTTTCGGAATCTCTCTACGGCCTCCGAAGAAGGCCCGCCAATATCGCCCTCAAGAATGACGACGCCACTACCACCACCACCAGCAGCAGCGCATTACGGAGGCGCCAGAGAGTTCTTTCCGTTGTTTTTTTGGTTGTGTTGCCGTATTTGAAATCCAAGTTGCATTCAATCTACAACAGAGAAAGGGAAGCCAGGCTTCAAGCCACTCTATGGGGAGATGAAACCCAAGGCTTTGATGATGGCCGAGGAGATTATTCTCCGGTGTCAACGCTAACTTCTGATGCCGCAGCCTCCATTTCAATGCGCATCGCAAACAGAGTTCAGAGAATTGTTGGGTTTTGCTACCCGTGGTTACATGCTAGTACTGAGGGCTTGCAATTTGCTTACCAACTCTTATACCTGTTGGATGCTACTGGATACTACTCGCTAGCACTGCACGCACTTGGGATTCATGTTTGCCGAGCTACAGGGCAAGAGCTGATGGATACCTCTTCTAGGATTTCAAAGATGCGTAACCGTGAACGTGAGAGGCTTCGTGGGCCTCAATGGTTGAAGACATTGCAAGGAGCATTGCTCAGCTGTTCGTACACTGTACTTGACTATGCACAAACCGGATTGATTGCAGCAGTGTTCTTTTTTAAAATGATGGAATGGTGGTACCAGTCTGCCGAGGAGAGAATGTCAGCTCCTACAGTATATCCTCCACCCCCTCCTCCTCCACCACCAAAGGTAGCGAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGTAAATCCATCTGTAGTTTCAGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGTATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGGAGACTCTTTCATGATGTCTAG
Predicted protein sequences of Glyma03g41050
>Glyma03g41050.1   sequence type=predicted peptide   gene model=Glyma03g41050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFQVGGQGSRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPFLHKLLDFEDESFALLMLVLESHTLRTTDASFSESLYGLRRRPANIALKNDDATTTTTSSSALRRRQRVLSVVFLVVLPYLKSKLHSIYNREREARLQATLWGDETQGFDDGRGDYSPVSTLTSDAAASISMRIANRVQRIVGFCYPWLHASTEGLQFAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDTSSRISKMRNRERERLRGPQWLKTLQGALLSCSYTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAKEGIPLPPDRTICPLCSQKRVNPSVVSVSGFVFCYACIFKYITQYKRCPITLMPSTVDQIRRLFHDV*






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