Glyma03g41000 - SoyBase

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Report for Sequence Feature Glyma03g41000

Feature Type:	gene_model
Chromosome:	Gm03
Start:	46575166
stop:	46576464
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g41000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04350	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF946) \| chr3:1153972-1156469 REVERSE LENGTH=567	SoyBase	E_val: 2.00E-94	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR17204	Panther	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	JGI		ISS
PTHR17204:SF7	Panther	PRE-MRNA PROCESSING-RELATED	JGI		ISS
PF06101	PFAM	Plant protein of unknown function (DUF946)	JGI		ISS
UniRef100_I1NCC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NCC0_SOYBN	SoyBase	E_val: 2.00E-148	ISS
UniRef100_Q9M8Z1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g04350/T6K12_3 n=1 Tax=Arabidopsis thaliana RepID=Q9M8Z1_ARATH	SoyBase	E_val: 1.00E-91	ISS

Expression Patterns of Glyma03g41000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g41000

Paralog	Evidence	Comments
Glyma19g43650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g41000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma03g41000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g41000

Limit To All Plant Sequences

>Glyma03g41000.1   sequence type=CDS   gene model=Glyma03g41000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTGTTGGTTTTGCTAGTGGAATAATAAGCCTTGGAAGACTAGAAGTTTTAAAAGTAAGAAAGTTTGAGAGAGTTTGGAGCTGCCCAAGTTCGCATGGTAAATCATCGGGTCATGTATTTTACAAACCTTTAGAGATTCCAGATGATTTTTCCTGCCTAGGTCACTATTGCCAGTCCAGTGATCAGCCATTAAGAGGACATGCTCTCGTGGCTCGTGAAACTTGTTCTGAACCTGAAGCCGAATCTCCAGCTCTTAAAAAACCAATTAACTACTCTTTGATATGGAGTGCTGATTCACCACATGATGGATGTGGTTATTTTTGGTTGCCAAATCCTCCACTCGGACACAAAGCAATGGGCTTAGTAGTTACTAACAAACCAGATGAACCTGAAGTTGAAGAAGTAAGATGTGTGCGAACCGATTTGACAGAAACATGTTTGGAACACAAGGGCATGCAAAAGAGGGACGCGGGCACCTATTCTAATAACTCTGGAAAAATAGCAGATATTGCTTGCTTGAAGAATCTTGACTCCACCTTACATGCCATGCCAAACATAAACCAAGTTCATGCACTCATCAATCATTATGGCCCCACTGCATACTTCCACCCTGATGAGTATACTTGCCATCATCAGTGCAATGGTTTTTCAAGAAAGGAGCACTTGCATATTCAACAGACAGGATCAAAATTACCTAGTGGAGGAACAAATGATGGTGCTTATTGGATAGATTTGCCTACTAATGATGATGCTAGAAATAATGTAAAGAAGGGAGACATAGAGAGTGCAGAGCTTTATGTTCATGTAAAAACAGCTCTGGGAGGAGCAAACACCAGATACAAGGTTGTTGCGGCTGAGTATCTTGGTGAGGGAGCTATTGCTGAAACATGTTGGTTACATGAGAGTGGGGTCCTACAGTTGTGTATGACTCACATTTTCTTTGGTGAATTTGGGCCAATTGGTCCAAAGGGAAAGGCCAACTGGGTTGGAGATGAA

Predicted protein sequences of Glyma03g41000

Limit To All Plant Sequences

>Glyma03g41000.1   sequence type=predicted peptide   gene model=Glyma03g41000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GVGFASGIISLGRLEVLKVRKFERVWSCPSSHGKSSGHVFYKPLEIPDDFSCLGHYCQSSDQPLRGHALVARETCSEPEAESPALKKPINYSLIWSADSPHDGCGYFWLPNPPLGHKAMGLVVTNKPDEPEVEEVRCVRTDLTETCLEHKGMQKRDAGTYSNNSGKIADIACLKNLDSTLHAMPNINQVHALINHYGPTAYFHPDEYTCHHQCNGFSRKEHLHIQQTGSKLPSGGTNDGAYWIDLPTNDDARNNVKKGDIESAELYVHVKTALGGANTRYKVVAAEYLGEGAIAETCWLHESGVLQLCMTHIFFGEFGPIGPKGKANWVGDE

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