SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G28640 | AT | Annotation by Michelle Graham. TAIR10: SSXT family protein | chr5:10647831-10649620 REVERSE LENGTH=210 | SoyBase | E_val: 4.00E-35 | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009955 | GO-bp | Annotation by Michelle Graham. GO Biological Process: adaxial/abaxial pattern specification | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003713 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG3227 | KOG | Calcium-responsive transcription coactivator | JGI | ISS | |
| PTHR23107 | Panther | SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN | JGI | ISS | |
| PF05030 | PFAM | SSXT protein (N-terminal region) | JGI | ISS | |
| UniRef100_B9S7I1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Synovial sarcoma associated ss18 protein, putative n=1 Tax=Ricinus communis RepID=B9S7I1_RICCO | SoyBase | E_val: 8.00E-54 | ISS |
| UniRef100_I1JRQ5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRQ5_SOYBN | SoyBase | E_val: 8.00E-134 | ISS |
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Glyma03g40930 not represented in the dataset |
Glyma03g40930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g43580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g249000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g40930.3 sequence type=transcript gene model=Glyma03g40930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACCCCATAATGTGTAGAAAGAGTCAAAACCAATAAAATAGTAATAGCCCCGATGTGTTGTTCCTCTCTCTCTCTCTTTCACTTTCTATTGACGCTTTCTAATATCTTGTTTCCGTGTGGTAGCATCATTGCAATAGCCAAGAGATAGAAGGGAAAAGTGGGAACACACGGAAAGCCAGACCCCAGACCCACAGAGAAGAGAGAGAGAGAGAGTTTCTCTCTGCACTTGCACTCTTGCAGGCCTAGCTTTGTTTGGTTTTAGTGTGAGAAAGAGAAAGTGTACATCTTTCTATCATATAGATATAGTCATAGTAGTAGTAGTATATAGGTATATCTATATATATATATATATATATATATATATTGCGTGTGTGAGAGATGCAGCAGCACCTGATGCAGATGCAGCCTATGATGGCAGCCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGGTCCGTTTCTATCTTCTTCTCAGCTTCTTCCTCTCTGCACTACCATTCCCCTTCATCTTATCTTTTATCTCTTCTGCTAGCTCACTTTGGATATACTAGTCTCGATCATACCCATATGACACATACACATACACACATGTTCCCTCTCTGCTCGGGGCCCTTTTGTCTCAGCATGCTTGTGGGTCTTGTATGCCACATTTAGTACCGCTTCCTTGCTTGTGCTTCCTGCTTTTTAATGTTTCTGTTCACACATGCACTTCTCTTCTTCTCTTTTTATTATTCTGTTTTTTCCCTTGTCAGCTTCTGCTACCGGTTACGTAATCTCTCTAACTGGGTGCTTAGTAGTGTTTGCTAAATATTCTCCTCACCAATTTGCTTTGCTTTATGTTCGGGTCTTTGTTCCATTTTCCACACTGTCTACTACATGTGCTGCATCAGAGCTTTTATGACGCGTGCTTTTCTCAGCGCTACCTCAGATCACATTTTCTCACCTTTCAGATCACAATGTCTGAATCCGAATATGCTTTGTTTGGAGATCACAAACCTTCTCCCTATCAAAACTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAATTCAGGCAAGCTTAGCGAGTGTGCCGAGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGCCTGGTCAGTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACACTACATGCAGGCTCAACAACAGACACAGCAGATGTCACCACAACAACTAATGGCGGCACGCTCGTCCCTTTTGTACGCACAGCAGCCATACTCAGCACTTCAACAGCAGCAAGCCATGCACAGTGCACTCGGGTCGAGTTCAGGACTCCACATGCTGCAAAGTGAAGGCAGCAATGTGAATGTGGGATCAGGCAGTGGCTCTGTAGGAGGAGGGTTTCCTGACTTGGTGCGCGGTGGTGGTGGTGGCGGTGGCTCGACAGGGGAGGGTTTGCACAGTGGTGGAAGGGGTATCATGGGAAGTAGCAAGCAGGAAATTGGGGGTTCAAGTGAAGGCCGAGGTGGGGGAAGCTCAGAGGGTGGTGAAAACCTTTACCTCAAAATTGCCGACGATGGAAACTAGCTAGCCACCCAAAATGGTAAAAATATTAATGCCAGCTTTTGTTGGGAAGAAGAACTAGGGAATGACATCAAGGGATAGTAACTAGGTAGTGGAAAACTCTAAGCTGCTTATGTATTATGTTTGTTTTATCTTGTGCTTGAGGCAAACGCTTGCCTTGATGTTTTCTACATTACTATTAGTAACATAAATTAGCAAATCTTCTAGTTCCTTGCGTTCATTTGTGCTTGTCCCGTGGCATGTGGCTCTGCATGCGGTCGGTTAGGGTATCTTGTTAGATTCCGTTTCACATTTTATAGTAGTATCAGTCTTTACATTTCATATTTTGGATATAATCAATAAGTATTTTTAAATTTATACTGTGATACAAGATTATTTTCAAGTTGAGAGAGAGAGAGAGTGAAGACAATTTTTTT
>Glyma03g40930.1 sequence type=CDS gene model=Glyma03g40930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGCAGCACCTGATGCAGATGCAGCCTATGATGGCAGCCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAATTCAGGCAAGCTTAGCGAGTGTGCCGAGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGCCTGGTCAGTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACACTACATGCAGGCTCAACAACAGACACAGCAGATGTCACCACAACAACTAATGGCGGCACGCTCGTCCCTTTTGTACGCACAGCAGCCATACTCAGCACTTCAACAGCAGCAAGCCATGCACAGTGCACTCGGGTCGAGTTCAGGACTCCACATGCTGCAAAGTGAAGGCAGCAATGTGAATGTGGGATCAGGCAGTGGCTCTGTAGGAGGAGGGTTTCCTGACTTGGTGCGCGGTGGTGGTGGTGGCGGTGGCTCGACAGGGGAGGGTTTGCACAGTGGTGGAAGGGGTATCATGGGAAGTAGCAAGCAGGAAATTGGGGGTTCAAGTGAAGGCCGAGGTGGGGGAAGCTCAGAGGGTGGTGAAAACCTTTACCTCAAAATTGCCGACGATGGAAACTAG >Glyma03g40930.3 sequence type=CDS gene model=Glyma03g40930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCGGGTCTTTGTTCCATTTTCCACACTGTCTACTACATGTGCTGCATCAGAGCTTTTATGACGCGTGCTTTTCTCAGCGCTACCTCAGATCACATTTTCTCACCTTTCAGATCACAATGTCTGAATCCGAATATGCTTTGTTTGGAGATCACAAACCTTCTCCCTATCAAAACTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAATTCAGGCAAGCTTAGCGAGTGTGCCGAGAACCAAGCAAGGCTTCAGAGAAATCTCATGTACTTAGCTGCAATAGCTGATTCTCAACCCCAACCACCCACCATGCCTGGTCAGTACCCTCCGAGTGGGATGATGCAGCAGGGAGCACACTACATGCAGGCTCAACAACAGACACAGCAGATGTCACCACAACAACTAATGGCGGCACGCTCGTCCCTTTTGTACGCACAGCAGCCATACTCAGCACTTCAACAGCAGCAAGCCATGCACAGTGCACTCGGGTCGAGTTCAGGACTCCACATGCTGCAAAGTGAAGGCAGCAATGTGAATGTGGGATCAGGCAGTGGCTCTGTAGGAGGAGGGTTTCCTGACTTGGTGCGCGGTGGTGGTGGTGGCGGTGGCTCGACAGGGGAGGGTTTGCACAGTGGTGGAAGGGGTATCATGGGAAGTAGCAAGCAGGAAATTGGGGGTTCAAGTGAAGGCCGAGGTGGGGGAAGCTCAGAGGGTGGTGAAAACCTTTACCTCAAAATTGCCGACGATGGAAACTAG
>Glyma03g40930.1 sequence type=predicted peptide gene model=Glyma03g40930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQPPTMPGQYPPSGMMQQGAHYMQAQQQTQQMSPQQLMAARSSLLYAQQPYSALQQQQAMHSALGSSSGLHMLQSEGSNVNVGSGSGSVGGGFPDLVRGGGGGGGSTGEGLHSGGRGIMGSSKQEIGGSSEGRGGGSSEGGENLYLKIADDGN* >Glyma03g40930.3 sequence type=predicted peptide gene model=Glyma03g40930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGSLFHFPHCLLHVLHQSFYDACFSQRYLRSHFLTFQITMSESEYALFGDHKPSPYQNYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQPPTMPGQYPPSGMMQQGAHYMQAQQQTQQMSPQQLMAARSSLLYAQQPYSALQQQQAMHSALGSSSGLHMLQSEGSNVNVGSGSGSVGGGFPDLVRGGGGGGGSTGEGLHSGGRGIMGSSKQEIGGSSEGRGGGSSEGGENLYLKIADDGN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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