Glyma03g40750 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g40750

Feature Type:	gene_model
Chromosome:	Gm03
Start:	46402384
stop:	46411685
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g40750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04740	AT	Annotation by Michelle Graham. TAIR10: RNA polymerase II transcription mediators \| chr3:1294037-1300555 FORWARD LENGTH=1703	SoyBase	E_val: 0	ISS
GO:0006357	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016592	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mediator complex	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1875	KOG	Thyroid hormone receptor-associated coactivator complex component (TRAP170)	JGI		ISS
PTHR12809	Panther	MEDIATOR COMPLEX SUBUNIT	JGI		ISS
PTHR12809:SF2	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF08638	PFAM	Mediator complex subunit MED14	JGI		ISS
UniRef100_G7IDQ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit n=1 Tax=Medicago truncatula RepID=G7IDQ4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023377C3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023377C3 related cluster n=1 Tax=unknown RepID=UPI00023377C3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g40750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g40750

Paralog	Evidence	Comments
Glyma19g43440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g40750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g247300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g40750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g40750

Limit To All Plant Sequences

>Glyma03g40750.1   sequence type=CDS   gene model=Glyma03g40750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGCCGAGTTAGGGCAACAGACGGTGGAGCTCTCCACCCTCGTTACACGCGCAGCTAATGATTCCTATGCCTCTCTCAAAGAACTCGTCGATAAATGCAAGTCCTCTGAATTATCCGACACGGACAAGAAGATTAGCATCCTCAAATTCCTCAGCAAGACTCAGCAGCGCATGATCCGCCTCAATGTCCTCTCCAAGTGGTGCCAACAGGTTCCTTTAATACACCACTGTCAGCAACTGGCTTCGACTGTTTCAAATCACGACATGTGTTTCACGCAAGCTGCTGATTCGTTATTCTTTATGCACGAGGGGCTTCAACAGGCGCGTGCCCCCGTTTACGATGTACCTTCCGCCATTGATATTCTTCTCACCGGAAGTTACCAGCGTTTGCCCAAATGTATAGAGGATGTGGGGACTCAGTATGCTTTGACCGAGGAACAGCAGAAACCTGCTTTGAAGAAGCTGGACACGCTTGTTCGGTCCAAATTGCTTCAGGTTTCTATTCCCAAAGAGTTTTCCAATATTATGGTTTCTGATGGTACCGCAATGCTTAGGTTAGATGGGGAGTTTAAGGTTTTGATAACGCTTGGGTATAGAGGGCACTTGTCTTTGTGGAGGATTTTGCATTTGGAGCTGCTTGTTGGTGAGAAGGATAAGCCTGTGAAATTGGAGGCAACACGACGTCACTTGCTTGGGGATGATTTGGAGAGGCGAATGGCAGCGGCAGAAAATCCATTTTCGGTGTTGTACTCTGTTCTCCATGAGCTGTGTGTTGCACTTGTCATGGACACGGTCATAAGGCAAGTGCAGGTTCTTCGACAGGGAAGGTGGAAGGATGCAATTCGGTTTGAGCTCATATCTGAGGGGCATGGAGCGAGTTCTAGCTCTGCGCTGAACCCTGATGGGGAATCTGATTCGTCTGCCATGCGAACTCCAGGGTTGAAAATTGTGTACTGGTTGGATTTTGATAAGAATGCTGGTGCGTCTGAATCGGGCACATGCCCATTTCTCAAAATTGAACCAGGGTCAGATCTTCAGATAAAGTGTCTCCACAGCAGCTTTGTCATAGATCCCTTGATGGGCAAGGAGGCAGAGTTTGTTTTGGACCAGAGTTGTATCGATGTTGAGAGGTTGCTGTTGAGAGCTATTTGTTGCAACAAATATACCCGTCTATTGGAAATTAAAAGAGAGCTGGTAAAAAATGTTCAGGTCTGTAGAACCGCAGATGATGTTGTGCTCCAGTCTCAAATGGGTGAACTTGATATTGAATATAAACAGAAGGATGATAAGTGCTGCAGCAAGGACTCTGAGGGCCATGAGGTTTTGTGTGTGCGTGCCTATGGCTCTTCTTTTTTCACTCTTGGAATTAATATAAGGAATGGCCGTTTTCTTCTTCAATCTTCTCAAAACATAGTGGTTTCTTCCGCTTTATTAGAATGTGAAGAAGCTTTGAATCAGGGATCTATGACTGCAGCTGAGGTCTTCATAAGCCTGAGAAGCAAAAGTCTATTGCACTTATTTGCATCTATTGGAAGGGTTTTAGGCCTTGAGGTATATGAGCATGAATTCAATACAGTTAAAATACCCAAGAATGTTTCAAATGGTTCAGCTATGCTATTGATGGGATTTCCCGACTGTGGAAGTTCTTACTTCCTGCTGATGCAACTTGATAAGGATTTCAAACCCTTGTTTAAGTTGTTAGAGACTCAGCCCAACCCATCTGTAAAAGATAATTTATCTGGTGAGCTTAATCAGGTGCTGCGGATCAAGGAAATTGATATAGGACAAATGCAAGTTCATGAAGATGAAATGAATTTAAGCCTGGTTGACTGGGGAAAATTACGCTCTGTTTTGCCCAATGCTGTTTGTCCAAATCAAACATCTGGACATGAGTTTTTTTCTGATATTCGCCTTGAGAATTCCATACAGATTGCAAGAGGTCATCCTTCAGGTTTTTCATCACTTGTTGATGAAGTGTTTGGACTTGAGAAAGGGTCTTCAACGCCTCCATTCTCTGTTAAAAATCTTTCTTCATCTGTGAATACATCCCTTCCTTCCCAATATGGCTCTGTCCCTATGACTCTCCATAGTTTAAAGGCTGGAAGCCCTTCGCCAAAGTGGGAAGTAGGAATGCAGATGCCACTGGTTAGTAATGTAACAAAAGCTTCTAGTGCTACTAACCACTATAGTGGTTCCTTGTTCTCATCAGGCAGTGTGAAGGGCCCAGTTCAGTCCAGTTCTGTTGGCTCAATACCAACTGGACAAGGAAGGAACTCTGCTGGAACAAAGCTATCTGCTTCCAAGTCTGAACAGGATTTGGCTTCTCTTAAATCTCTGCATTCAGTTGACTCTAGTTCCTCTGCTGCAATGGATGAAGAACAGCTAAGAGTGTTCAGTGATAATTCCAACGATGCTTTAGCTGGAAGTCGGTCATCTCGACTTTTATCTCCTCCACGGCCAACTGGCTCTCGAATGTCCATACCTAATTCCAGACCTAATGGACCTCAAGTTGAATCGTTTAAGGCTGCTGGATCTGGTTCATGTGCTACAACTCCCGTATCCCAAACACTGGAATCAACGGTTAGCTATAACACAGGTGAAGATGTTACCTCCAAAAATGATAGGAAATCTGGAAAACGAACAGCTTCGGATATGTTGACCTTGATTCCATCTCTTCAAGGTGTTGAAAGCAACTCGGGAATCTGCAAGAAAAGAAAAATTTCTGATTCAGCTGGCTGTCAACTGTCTTTGCCACAAGGTGTCATGTCCGCTGAAATAATACCCAGAACAGAAGGATACAGTTATGGAAGTTTAATCGCAGAAGCAAATAAAGGGAATGTTCCATCTAGCATTTATGTTGCGGCTCTTCTTCATGTGGTCAGGCATTGTTCACTTTGCATTAAGCATGCTAGACTAACCAGCCAGATGGATGCATTAGACATCTCATATGTTGAAGAAGTGGGTTTGAGAAGTGGATCATCTAACATTTGGTTTCGACTTCCACTTGCTAGAGGTGACTCATGGCAACATATATGTTTGCGACTGGGCAGACCTGGTTGCATGTACTGGGATGTTAAAATAAATGATCAGCACTTCAGGGATTTATGGGAGCTTCAGAAAGGGATCAATAATACACCATGGGGTTCAGGTGTACGAATTGCTAATACATCTGACATAGATTCACATATACATTATGATCCAGATGGTGTTGTTTTGAGTTATCAATCTGTTGAAGTAGATAGTATAAAGAAATTGGTGGCTGATATCCAAAGGCTTGCCAATGCAAGAACATTTGCCCTTGGCATGAGGAAATTGCTTGGCGTAAGAGCAGAGGAGAAGTCAGAAGAGCTAGTTACAAGTTCTGACACCAAAACACCCAGTACCAAGGTTGCTCTGGATACTGCAGACAAACTAACTGAACAGATGAGAAGGGCGTTTAGAATTGAGGCAGTTGGACTGATGAGCTTGTGGTTTAGCTTTGGTTCAGGTGTCCTTGCTCGTTTTGTTGTTGAATGGGAGTCTGGTAAAGAGGGTTGCACTATGCATGTATCTCCTGATCAACTTTGGCCTCATACCAAGTTTCTGGAAGATTTCATAAATGGAGGTGAAGTTTCACCGCTGTTGGATTGCATTCGGCTGACTGCAGGGCCCTTGCATGCTCTGGCAGCTGCAACCCGGCCAGCAAGAGCTGGTCCTGTTCCAGGGGTTGCAGCTGCCTTATCTTCTATTCCTAAACAGAATGGTAGTTATATATCCTCACACGGTCTTCTGCTTAGTAATTCAACTACTAATGTTGGTCTGCCAACATCTGGACCTGGGGCAAACACTGTCATGCCTACTGCTAGTGGTCTCACTAGCCAAACACTTTCAATGTTAGCTGCTTCTGGACGTGGTGGCCCAGGCATTGTTCCAAGTTCACTTTTGCCCATTGATGTTTCTGTTGTGCTCCGCGGTCCATATTGGATACGGATCATGTACAGGAAACAATTTGCTGTTGACATGCGTTGCTTTGCAGGAGATCAGGTGTGGTTGCAGCCTGCAACACCGCCTAAAGAGGGCCGTCTTTCTGGAGGTTCACTGCCTTGCCCCCAGTTTCGGCCTTTTATCATGGAACATGTTGCCCAGGAATTGAATGGATTGGATCCTAGTTTTACTGGACAACAGGCAGGTGGGATGGCAAATTCAAATAATCCAAACCCTGGTTCAGGATCCCAGATGATGGCTGCAAATGGAAATAGAATAAATTTGCCAATTTCTGCTGCAATGCCTAGGACAGGAAACCAAGTAGCTAGTTTAAACCGTGTTGGAAATGCTTTAGCAGGCTCTTCAAACTTAGCTTTGATGACATCAGCTGTCTCTCTACGGAGGCCACCTGGAACGGTTGTCCCTGCACATGTCAGAGGCGAGCTGAACACAGCCATTATTGGTCTTGGTGATGATGGAGGATATGGAGGTGGTTGGGTTCCTCTTGTTGCTCTTAAGAAGGTTTTGAGAGGTATTCTCAAGTATCTTGGAGTGTTATGGCTTTTTGCCCAGTTACCTGAACTTTTGAAAGAGATCCTAGGATCTATTTTGAAGGAAAATGAAGGCGCACTTTTGAATTTGGACCCTGAGCAGCCTGCCTTACGTTTTTTTGTTGGAGGATATGTATTTGCTGTTAGTGTCCACAGAGTTCAGCTTCTTCTTCAGGTATTAAGTGTAAAACGCTTTCACCAACAGCAACAGCAACAGCAGCAAAATTCAAATCCCGCACCAGAGGAATTAAGTCAATCTGAAATAAGTGAAATATGCGACTACTTCAGCCGTCGAGTGGCATCAGAACCCTATGATGCTTCTCGTGTTGCATCATTCATAACTATGCTCACTTTACCTGTGGCAGTACTGAGAGAATTCTTGAAATTAATTGCTTGGAAAAAGGGATTATCGCAGGCACAAGTTGGAGATGTTGTTTCAGCTCAAAAGCCACGGATTGAGTTATGTCTTGAAAATCATTCTGGGTTGAATATGGATGAGAACTCTGAGAGCTCATCTGCATTCAGAAGCAACATCCATTATGATCGCCTGCATAATTCTGTTGATTTTGCGCTTACTGTTGTTCTTGATTCTGCTCACATCCCTCATGTCAATGCTGCTGGTGGTGCTGCATGGTTGCCATACTGTGTTTCGGTAAGATTGAGATATTCATTTGGTGAAAGTCCCAATGTATCATTTATTGGCATGAATGGTAGCCATGGTGGTAGGGCATGTTGGTTACGTGTTGATGATTGGGAAAAATGCAAACAGAGGGTGGCACGAACAGTGGAGGTTAATGGGAACTCAGCAGCAGATGTAAGTCAAGGTAGGCTGAAATTAATTGCAGATAGTGTGCAAAGAAATCTGCATATGTGCATTCAAGGGCTAAGAGATGGTAGTGGGGTCACAACCAGCTCTGGAGCTGCGTGA

Predicted protein sequences of Glyma03g40750

Limit To All Plant Sequences

>Glyma03g40750.1   sequence type=predicted peptide   gene model=Glyma03g40750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTAELGQQTVELSTLVTRAANDSYASLKELVDKCKSSELSDTDKKISILKFLSKTQQRMIRLNVLSKWCQQVPLIHHCQQLASTVSNHDMCFTQAADSLFFMHEGLQQARAPVYDVPSAIDILLTGSYQRLPKCIEDVGTQYALTEEQQKPALKKLDTLVRSKLLQVSIPKEFSNIMVSDGTAMLRLDGEFKVLITLGYRGHLSLWRILHLELLVGEKDKPVKLEATRRHLLGDDLERRMAAAENPFSVLYSVLHELCVALVMDTVIRQVQVLRQGRWKDAIRFELISEGHGASSSSALNPDGESDSSAMRTPGLKIVYWLDFDKNAGASESGTCPFLKIEPGSDLQIKCLHSSFVIDPLMGKEAEFVLDQSCIDVERLLLRAICCNKYTRLLEIKRELVKNVQVCRTADDVVLQSQMGELDIEYKQKDDKCCSKDSEGHEVLCVRAYGSSFFTLGINIRNGRFLLQSSQNIVVSSALLECEEALNQGSMTAAEVFISLRSKSLLHLFASIGRVLGLEVYEHEFNTVKIPKNVSNGSAMLLMGFPDCGSSYFLLMQLDKDFKPLFKLLETQPNPSVKDNLSGELNQVLRIKEIDIGQMQVHEDEMNLSLVDWGKLRSVLPNAVCPNQTSGHEFFSDIRLENSIQIARGHPSGFSSLVDEVFGLEKGSSTPPFSVKNLSSSVNTSLPSQYGSVPMTLHSLKAGSPSPKWEVGMQMPLVSNVTKASSATNHYSGSLFSSGSVKGPVQSSSVGSIPTGQGRNSAGTKLSASKSEQDLASLKSLHSVDSSSSAAMDEEQLRVFSDNSNDALAGSRSSRLLSPPRPTGSRMSIPNSRPNGPQVESFKAAGSGSCATTPVSQTLESTVSYNTGEDVTSKNDRKSGKRTASDMLTLIPSLQGVESNSGICKKRKISDSAGCQLSLPQGVMSAEIIPRTEGYSYGSLIAEANKGNVPSSIYVAALLHVVRHCSLCIKHARLTSQMDALDISYVEEVGLRSGSSNIWFRLPLARGDSWQHICLRLGRPGCMYWDVKINDQHFRDLWELQKGINNTPWGSGVRIANTSDIDSHIHYDPDGVVLSYQSVEVDSIKKLVADIQRLANARTFALGMRKLLGVRAEEKSEELVTSSDTKTPSTKVALDTADKLTEQMRRAFRIEAVGLMSLWFSFGSGVLARFVVEWESGKEGCTMHVSPDQLWPHTKFLEDFINGGEVSPLLDCIRLTAGPLHALAAATRPARAGPVPGVAAALSSIPKQNGSYISSHGLLLSNSTTNVGLPTSGPGANTVMPTASGLTSQTLSMLAASGRGGPGIVPSSLLPIDVSVVLRGPYWIRIMYRKQFAVDMRCFAGDQVWLQPATPPKEGRLSGGSLPCPQFRPFIMEHVAQELNGLDPSFTGQQAGGMANSNNPNPGSGSQMMAANGNRINLPISAAMPRTGNQVASLNRVGNALAGSSNLALMTSAVSLRRPPGTVVPAHVRGELNTAIIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKENEGALLNLDPEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHQQQQQQQQNSNPAPEELSQSEISEICDYFSRRVASEPYDASRVASFITMLTLPVAVLREFLKLIAWKKGLSQAQVGDVVSAQKPRIELCLENHSGLNMDENSESSSAFRSNIHYDRLHNSVDFALTVVLDSAHIPHVNAAGGAAWLPYCVSVRLRYSFGESPNVSFIGMNGSHGGRACWLRVDDWEKCKQRVARTVEVNGNSAADVSQGRLKLIADSVQRNLHMCIQGLRDGSGVTTSSGAA*

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