Glyma03g40680 - SoyBase

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Report for Sequence Feature Glyma03g40680

Feature Type:	gene_model
Chromosome:	Gm03
Start:	46358799
stop:	46362411
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g40680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60690	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein \| chr1:22349892-22351668 REVERSE LENGTH=345	SoyBase	E_val: 2.00E-139	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004033	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldo-keto reductase (NADP) activity	SoyBase	N/A	ISS
KOG1575	KOG	Voltage-gated shaker-like K+ channel, subunit beta/KCNAB	JGI		ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF12	Panther	OXIDOREDUCTASE	JGI		ISS
PF00248	PFAM	Aldo/keto reductase family	JGI		ISS
UniRef100_G7L1V2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein PCNT115 n=3 Tax=Medicago truncatula RepID=G7L1V2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JRM5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRM5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g40680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g40680

Paralog	Evidence	Comments
Glyma19g43351	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g40680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g246700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g40680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g40680

Limit To All Plant Sequences

>Glyma03g40680.1   sequence type=CDS   gene model=Glyma03g40680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGATATTCCTCGGGTGAAGCTTGGAAGCCAAGGCCTGGAGGTTTCCAAGTTAGGATTTGGTTGTATGGGCCTAAGTGGAGTGTACAACGATCCTGTTCCCGAAGAGGTTGGCATCTCTTTGATCAAACACGCATTCACCAAAGGGGTCACTTTCTTTGATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGGATTGTCAAAATGGAAAATGGTAATGTGATAGTGAACGGTTCCCCTGAATATGTTCGGTCCTGTTGCGAGGGTAGCCTCCAACGCCTTGGTGTCAGCTACATTGATCTCTATTATCAGCACCGTGTTGACACAACTGTACCCATTGAAGACACCATGGGAGAGCTTAAAAGGCTGGTCCAAGAGGGAAAAATAAGGTACATAGGATTGTCGGAAGCTAGCCCTGACACAATTAGGAGGGCACATGCTGTTCATCCCATTACTGCTGTGCAACTGGAGTGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTTGGTGGCAAGGCTGTCGTAGAAAGTATACCTGCAAACAGTTTTCTGGCATTTCAACCAAGGTTACGAGGGGAGAACTTTGACAAGAACAAAATCTTATATTCTAGGATAGAAAAATTGGCAGAGAAGTATGGATGTACATCTTCGCAACTTGCTCTTGCATGGATTCTTCATCAAGGAGACGATGTGGTACCCATCCCTGGAACAACTAAGATAAAAAATCTTGATAGTAATATCGGTTCATGTGAAGTGAAACTCAGCAAAGATGATTTAAAGGAGATTACAGATGCTGTACCAATATCTGAGGTGGCAGGGGATCGGACCACTGATGCATTTGTTAGATGTTCATGGAAGTTTGCTAATACTCCACCAAAAGCATAA

Predicted protein sequences of Glyma03g40680

Limit To All Plant Sequences

>Glyma03g40680.1   sequence type=predicted peptide   gene model=Glyma03g40680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADIPRVKLGSQGLEVSKLGFGCMGLSGVYNDPVPEEVGISLIKHAFTKGVTFFDSADFYGARANEVLVGKALRDFPRDQFQIATKFGIVKMENGNVIVNGSPEYVRSCCEGSLQRLGVSYIDLYYQHRVDTTVPIEDTMGELKRLVQEGKIRYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTREIEQDIVPLCRELGIGIVPYSPLGRGFFGGKAVVESIPANSFLAFQPRLRGENFDKNKILYSRIEKLAEKYGCTSSQLALAWILHQGDDVVPIPGTTKIKNLDSNIGSCEVKLSKDDLKEITDAVPISEVAGDRTTDAFVRCSWKFANTPPKA*

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