Glyma03g40660 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g40660

Feature Type:	gene_model
Chromosome:	Gm03
Start:	46341908
stop:	46350970
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g40660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49570	AT	Annotation by Michelle Graham. TAIR10: peptide-N-glycanase 1 \| chr5:20112071-20116125 REVERSE LENGTH=721	SoyBase	E_val: 0	ISS
GO:0006289	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0010188	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to microbial phytotoxin	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000224	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity	SoyBase	N/A	ISS
GO:0003684	GO-mf	Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG0909	KOG	Peptide:N-glycanase	JGI		ISS
PTHR12143	Panther	PEPTIDE N-GLYCANASE (PNGASE)-RELATED	JGI		ISS
PTHR12143:SF2	Panther	PEPTIDE N-GLYCANASE (PNGASE)	JGI		ISS
PF01841	PFAM	Transglutaminase-like superfamily	JGI		ISS
UniRef100_G7L1U8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase n=2 Tax=Medicago truncatula RepID=G7L1U8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JRM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRM3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g40660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g40660

Paralog	Evidence	Comments
Glyma19g43320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g40660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g246500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g40660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g40660

Limit To All Plant Sequences

>Glyma03g40660.1   sequence type=CDS   gene model=Glyma03g40660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCGCGCAGGTTTCTGGTGGTCCACGACGACTCTGACTTTGATCTACATTACGACACAGACGACGGCTTCGAAGTCTTTCAATTCCAGCTTTATTCCCTCACTTCCGTTCCACCTCATCAACAAAAGATTTTCGGAGCCGAACAAGATACTCCTGTGGTCAATGACTCTGATCTCGTCGCCATTTCTGACAAACTACGACTCGTCTCGGTCAACGACTCCGAACCCGAACCAAGCGCTGCCGATTTGTTGAAATCCGATGAGGAATTGGCCCGACTCTTGCAGGCAGAGGAGGAAGCGCTTATGTTGCAGCAGTATGTGGCGAGCGAAAATCCTCGAGAATTTGATAGTAGAGTACGGCCCCACGTTAGTCAAGTCCGCATGTATGAGGATGCAACGCGGCAGGAGGCTGCTCGGAAGTCCGTTCCTATGGAAGAGCTCGAGGAGAAAGCTTTGGTCTCTTTGGCCAAGGAGGGGAACTTCAAGCCATCAAAAATAGAACAAGATCATGCTTTCCTGCTGCAGCTGCTTTTCTGGTTCAAACGATCCTTCAGATGGGTGAATTCACCATCTTGTCATGATTGTGGCAACGAAACTGTAGGCCAGGGCATGGCTCCTCCACTTCCTTCCGAGACTCTTTATGGGGCTTCTAGGGTTGAACTCTATCGCTGTACTGTTTGCTCCCAACTAACTCGCTTCCCTCGGTACAATGATCCAATGAAGCTTGTGGAAACAAGAGAGGGCCGCTGCGGGGAATGGGCCAATTGCTTTACGTTCTATTGTCGAGCTTTTGGCTATGAGTCACGTCTGATCTTGGACTTTACAGATCATGTTTGGACAGAGTGCTTCTCTCAATTCTTGGGAAGATGGATGCATCTTGACCCATGTGAAGGAATCTATGACAAGCCATTATTATATGAAAAAGGGTGGGGGAAAAAATTAAATTATGTAATAGCCATAGCAAAAGATGGAGTTTATGATGTCACCAAACGATACACAAGGAAGTGGCATGAGGTCCTATCTCGACGTACTATCATTACAGAGCCTTCTTTGTCATCTTTACTCTCTAATATAACAAAAGAAAGTCGAAGAGGTTTTGCATCTCAACTACTTTCAATTATTGAAGTCCGTGATATGGAGGAAAACAAAGAACTTGAGAGGAGTTTACATGCTGAAGATGACGAGTCACTCTCATTACCTGGAAGAAGAAGTGGGAATGAGGAATGGCGCAAATCTAGATTAGAAATGGGTTCTGATAAGCTAAGTTCCTCTGCTTGCCCAGTTCGTTTGTGCGTAGATGAGCACGTGACAAGGATTTATAATGCATTCCGTCCTATCCTTTATCAATTTGTTGGGGAAGAATTAACAAAGTCGGAAGCTGTTGAAGTACTCAGGATTACTAAAGGAATTCTTTTGGATCTTAGCAAGTCCCCCTATAAAACAAGAAGGACCTCCATTGACTCAGTTCTAGATAACCCAAAATTTCAGAAACTATTGCCATCTTTTGATGACTTACTTGGTGCTCTTTCACTGGAGAAAAAGGTGAATACAGATGGGAGAGTTGAATTTTGTTTGGTTGGTGACCCTGTAGTAACTTCTTTAGCATTGCCTGTTGCGTTAGATGCTCTGGATGACATGATTTACATTCTTAACAAGTGTGAAAACTATGGGAAAGATATGTTTCTGTTGCCATTTTTAAAATTAAATAGAATACATTCTGGTTCAGCCATTGCAAGTTCAGAGGAGTTGCCTTTTGGGATTATAACATCAGCATTTGATGGCACCCGAATTTCTAAATGGGAAGAACCAAACGGAGCAAGAGGTTGTTGGGTCGTGTATAGAACATTTGGTAACGAGATGTTTGAGCTTGTAGCATATGAGTTGATGTCAGCCAATGATGCACCAGAAAGGGATCCAATGGACTGGATTCTTGAAGGGAGCAGTGATGACGGGATCAGCTGGCAAGTTTTGGACAAGCAAACCTCTCAGTTCTTTGAAGACCGTTTCCAGCGTAGAACATACACAATCAGTTCTGCAAATTTTCCATGTAATGTTTTCAGATTTAGGTTTCTGGCAGTCAGAGATATTCAGTCTAATTCCCGGCTGCAAATTGGTAGCATTGACCTCTATGCGAAATCTATAGGTAAATTGCGAGCATAA

Predicted protein sequences of Glyma03g40660

Limit To All Plant Sequences

>Glyma03g40660.1   sequence type=predicted peptide   gene model=Glyma03g40660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVARRFLVVHDDSDFDLHYDTDDGFEVFQFQLYSLTSVPPHQQKIFGAEQDTPVVNDSDLVAISDKLRLVSVNDSEPEPSAADLLKSDEELARLLQAEEEALMLQQYVASENPREFDSRVRPHVSQVRMYEDATRQEAARKSVPMEELEEKALVSLAKEGNFKPSKIEQDHAFLLQLLFWFKRSFRWVNSPSCHDCGNETVGQGMAPPLPSETLYGASRVELYRCTVCSQLTRFPRYNDPMKLVETREGRCGEWANCFTFYCRAFGYESRLILDFTDHVWTECFSQFLGRWMHLDPCEGIYDKPLLYEKGWGKKLNYVIAIAKDGVYDVTKRYTRKWHEVLSRRTIITEPSLSSLLSNITKESRRGFASQLLSIIEVRDMEENKELERSLHAEDDESLSLPGRRSGNEEWRKSRLEMGSDKLSSSACPVRLCVDEHVTRIYNAFRPILYQFVGEELTKSEAVEVLRITKGILLDLSKSPYKTRRTSIDSVLDNPKFQKLLPSFDDLLGALSLEKKVNTDGRVEFCLVGDPVVTSLALPVALDALDDMIYILNKCENYGKDMFLLPFLKLNRIHSGSAIASSEELPFGIITSAFDGTRISKWEEPNGARGCWVVYRTFGNEMFELVAYELMSANDAPERDPMDWILEGSSDDGISWQVLDKQTSQFFEDRFQRRTYTISSANFPCNVFRFRFLAVRDIQSNSRLQIGSIDLYAKSIGKLRA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain