Glyma03g40520 - SoyBase

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Report for Sequence Feature Glyma03g40520

Feature Type:	gene_model
Chromosome:	Gm03
Start:	46250620
stop:	46252838
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g40520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28040	AT	Annotation by Michelle Graham. TAIR10: DNA-binding storekeeper protein-related transcriptional regulator \| chr5:10037654-10038937 REVERSE LENGTH=427	SoyBase	E_val: 7.00E-94	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF04504	PFAM	Protein of unknown function, DUF573	JGI		ISS
UniRef100_B9RET1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription regulator, putative n=1 Tax=Ricinus communis RepID=B9RET1_RICCO	SoyBase	E_val: 1.00E-101	ISS
UniRef100_I1JRL2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRL2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g40520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g40520

Paralog	Evidence	Comments
Glyma19g43180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g40520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g245200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g40520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g40520

Limit To All Plant Sequences

>Glyma03g40520.1   sequence type=CDS   gene model=Glyma03g40520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGGAGCAACACGACGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGACGAGTCTCAGGAGGACGAAGAGTACGAAGAAGACGACGACGAAGAAAACGTGCCCTCTCCCTCCACCGCTCTCGCTGTCACCGTCGCCGTCCCCGGTTCCGCCGTCTCCAACGGCGGCGGTGGCTCTCCAATTTCGAAGCCCACCGCCACCGCCACCACCGCCACCATCGTCCTCGCCGACTCATCCGATCCGAAGCGGCGTCGCCTGGAGCTAATCGAGGAGAAAAAGCCGCCGCCGCCGCTGGATGACTCGCGGCGGCTGTTTCAGCGGCTGTGGACCGATGAGGATGAGATCGAGCTCTTGCAAGGGTTCCTCGACTACACATCGCAGCGAGGATCCTCGCACCACAACGACACCGCTTTGTTCTACGACCAAATCAAGTCGAAGCTCCAACTCGATTTCAACAAGAATCAGCTCGTGGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGGAACGTCCTCAACAAGATTTGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCTCACGATCAAGCCACCTTCGAAATCTCGCGCAAGATCTGGAGCAACGTGACTCCAGTCGGCGACAATTCATTGGACGACGACGAAATCAACCCTAGCCGTAGCCCCAACCCTAACCTTAATTTTAGCCCTGTAATTCTTAAGAATGAAACGATTTTCAGGAATTCCACGGAGAAGAAAACACCGAAACGCTCTCGGCCTCGATCGGCGGTGAAAATCGAGCCAAATGACGGATCCGCGTCGAACAGAGATCATAATTGTATTAGCAATACTACACCTACTGCTACTGCTGCTGCTACTAACACTACTGCTGCTGCTGCTGCTGGTACTAACAATAATAACTGTAACAGTGGTTATGGAAATAACATACCGAGTTTGATTGAGGAGACGGTGAAGAGTTGTTTGTCGCCGGTGTTGAAGGAATTGATGGCAGGGGCCATGGGAGGAGGAGCGTTTGGAGGGAGAGGGTTTTCGTTGAACTTGAACCCTATGCCTTTTATGAATTTGAGTTTTGGCGGTGGGGAAATGGTGGATGAGAAATGGAGGAAGCAACAGATATTGGAGTTGGAAGTGTATTCGAAGCGGTTGGAACTGGTGCAGGATCAGATCAAGGCAGCTATGGAGGAGTTGCGGTCACATGGAGGAGGAGGATTATAG

Predicted protein sequences of Glyma03g40520

Limit To All Plant Sequences

>Glyma03g40520.1   sequence type=predicted peptide   gene model=Glyma03g40520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASEQHDAVFREEDMDDDDDESQEDEEYEEDDDEENVPSPSTALAVTVAVPGSAVSNGGGGSPISKPTATATTATIVLADSSDPKRRRLELIEEKKPPPPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKICSGKEFSFKSAHDQATFEISRKIWSNVTPVGDNSLDDDEINPSRSPNPNLNFSPVILKNETIFRNSTEKKTPKRSRPRSAVKIEPNDGSASNRDHNCISNTTPTATAAATNTTAAAAAGTNNNNCNSGYGNNIPSLIEETVKSCLSPVLKELMAGAMGGGAFGGRGFSLNLNPMPFMNLSFGGGEMVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSHGGGGL*

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