Glyma03g40280 - SoyBase

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Report for Sequence Feature Glyma03g40280

Feature Type:	gene_model
Chromosome:	Gm03
Start:	46076955
stop:	46080391
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g40280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08830	AT	Annotation by Michelle Graham. TAIR10: copper/zinc superoxide dismutase 1 \| chr1:2827700-2829053 FORWARD LENGTH=152	SoyBase	E_val: 1.00E-86	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010039	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to iron ion	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0019430	GO-bp	Annotation by Michelle Graham. GO Biological Process: removal of superoxide radicals	SoyBase	N/A	ISS
GO:0034599	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to oxidative stress	SoyBase	N/A	ISS
GO:0035195	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by miRNA	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0046688	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to copper ion	SoyBase	N/A	ISS
GO:0071280	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to copper ion	SoyBase	N/A	ISS
GO:0071329	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to sucrose stimulus	SoyBase	N/A	ISS
GO:0071457	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to ozone	SoyBase	N/A	ISS
GO:0071472	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to salt stress	SoyBase	N/A	ISS
GO:0071484	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to light intensity	SoyBase	N/A	ISS
GO:0071493	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to UV-B	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004784	GO-mf	Annotation by Michelle Graham. GO Molecular Function: superoxide dismutase activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG0441	KOG	Cu2+/Zn2+ superoxide dismutase SOD1	JGI		ISS
PTHR10003	Panther	CU/ZN SUPEROXIDE DISMUTASE	JGI		ISS
PF00080	PFAM	Copper/zinc superoxide dismutase (SODC)	JGI		ISS
UniRef100_I1JRI7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Superoxide dismutase [Cu-Zn] n=1 Tax=Glycine max RepID=I1JRI7_SOYBN	SoyBase	E_val: 6.00E-102	ISS
UniRef100_I1JRI7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Superoxide dismutase [Cu-Zn] n=1 Tax=Glycine max RepID=I1JRI7_SOYBN	SoyBase	E_val: 6.00E-102	ISS

Expression Patterns of Glyma03g40280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g40280

Paralog	Evidence	Comments
Glyma19g42890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g40280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g242900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g40280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g40280

Limit To All Plant Sequences

>Glyma03g40280.2   sequence type=transcript   gene model=Glyma03g40280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATAGATAGAATGGTAATAGTGGTCGAGGATCTCGAGGCGTGCTAACACGCCTCACTCGCTATAAATAAATAACAATAAACCCACTCTGCTTCCATCCATCTTTTTCTTCTTACTCTAGACTCTTCCTTTTCTCTTCTCTGTCTAAGGGGTGCCCTGAGATCACATTGAACAATGGTGAAGGCTGTGGCCGTTCTTGGCAGCAGTGAGGGTGTCACTGGAACTATTCACTTCGTTCAGGAGGGAAGTGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGTTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTCTCAACTGGATCACATTTCAATCCTAATAACAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGATTCCTCTCACTGGACCAAACAACATCATAGGAAGGGCGGTTGTTGTCCATGCTGATCCTGATGATCTTGGGAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAAACTAATCACATGAAGTTGGAAACGTGCTTTAGATTTGTGGAATAAAGTAGCACCCATTTAAACCCGTTTGGTTAGGTCCGGTCTGTACTGCTGAATTCTGTGTTTTGCTTGTATTGTATCGACACTTGATGCTTAATCAAATTGTTACATTGCTTGAAGTATGTGTTGGTGGTTATCCTTATTTCTTGTATCAATTTGTGCTTGAAGTATGATGATACTCGAGAAATGTGAGATTTTCAATTGGAAAATAATGACATGGAATGGAATACAAGTGTCATTTTATTGTTTGGATATTTTATGATAGAACCAAACAAAGATTAGTTGGGGGGGGGGGGGGG

>Glyma03g40280.3   sequence type=transcript   gene model=Glyma03g40280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATAGATAGAATGGTAATAGTGGTCGAGGATCTCGAGGCGTGCTAACACGCCTCACTCGCTATAAATAAATAACAATAAACCCACTCTGCTTCCATCCATCTTTTTCTTCTTACTCTAGACTCTTCCTTTTCTCTTCTCTGTCTAAGGGGTGCCCTGAGATCACATTGAACAATGGTGAAGGCTGTGGCCGTTCTTGGCAGCAGTGAGGGTGTCACTGGAACTATTCACTTCGTTCAGGAGGGAAGTGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGTTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTCTCAACTGGATCACATTTCAATCCTAATAACAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACTGTCAGCTTCACTATTACTGACAGCCAGATTCCTCTCACTGGACCAAACAACATCATAGGAAGGGCGGTTGTTGTCCATGCTGATCCTGATGATCTTGGGAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAAACTAATCACATGAAGTTGGAAACGTGCTTTAGATTTGTGGAATAAAGTAGCACCCATTTAAACCCGTTTGGTTAGGTCCGGTCTGTACTGCTGAATTCTGTGTTTTGCTTGTATTGTATCGACACTTGATGCTTAATCAAATTGTTACATTGCTTGAAGTATGTGTTGGTGGTTATCCTTATTTCTTGTATCAATTTGTGCTTGAAGTATGATGATACTCGAGAAATGTGAGATTTTCAATTGGAAAATAATGACATGGAATGGAATACAAGTGTCATTTTATTGTTTGGATATTTTATGATAGAACCAAACAAAGATTAGTTGGGGGGGGGGGGGGG

Coding sequences of Glyma03g40280

Limit To All Plant Sequences

>Glyma03g40280.1   sequence type=CDS   gene model=Glyma03g40280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGCTGTGGCCGTTCTTGGCAGCAGTGAGGGTGTCACTGGAACTATTCACTTCGTTCAGGAGGGAAGTGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGTTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTCTCAACTGGATCACATTTCAATCCTAATAACAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACTGTCAGCTTCACTATTACTGACAGCCAGATTCCTCTCACTGGACCAAACAACATCATAGGAAGGGCGGTTGTTGTCCATGCTGATCCTGATGATCTTGGGAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAA

>Glyma03g40280.2   sequence type=CDS   gene model=Glyma03g40280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGCTGTGGCCGTTCTTGGCAGCAGTGAGGGTGTCACTGGAACTATTCACTTCGTTCAGGAGGGAAGTGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGTTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTCTCAACTGGATCACATTTCAATCCTAATAACAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGATTCCTCTCACTGGACCAAACAACATCATAGGAAGGGCGGTTGTTGTCCATGCTGA

>Glyma03g40280.3   sequence type=CDS   gene model=Glyma03g40280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGGCTGTGGCCGTTCTTGGCAGCAGTGAGGGTGTCACTGGAACTATTCACTTCGTTCAGGAGGGAAGTGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGTTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTCTCAACTGGATCACATTTCAATCCTAATAACAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACTGTCAGCTTCACTATTACTGACAGCCAGATTCCTCTCACTGGACCAAACAACATCATAGGAAGGGCGGTTGTTGTCCATGCTGATCCTGATGATCTTGGGAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAA

Predicted protein sequences of Glyma03g40280

Limit To All Plant Sequences

>Glyma03g40280.1   sequence type=predicted peptide   gene model=Glyma03g40280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKAVAVLGSSEGVTGTIHFVQEGSGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGSHFNPNNKEHGAPEDENRHAGDLGNVNVGDDGTVSFTITDSQIPLTGPNNIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG*

>Glyma03g40280.2   sequence type=predicted peptide   gene model=Glyma03g40280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKAVAVLGSSEGVTGTIHFVQEGSGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGSHFNPNNKEHGAPEDENRHAGDLGNVNVGDDDSSHWTKQHHRKGGCCPC*

>Glyma03g40280.3   sequence type=predicted peptide   gene model=Glyma03g40280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKAVAVLGSSEGVTGTIHFVQEGSGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGSHFNPNNKEHGAPEDENRHAGDLGNVNVGDDGTVSFTITDSQIPLTGPNNIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG*

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