SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05000 | AT | Annotation by Michelle Graham. TAIR10: Transport protein particle (TRAPP) component | chr3:1387444-1388697 REVERSE LENGTH=173 | SoyBase | E_val: 3.00E-107 | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0048868 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube development | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| KOG3316 | KOG | Transport protein particle (TRAPP) complex subunit | JGI | ISS | |
| PTHR12817 | Panther | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B | JGI | ISS | |
| PF04051 | PFAM | Transport protein particle (TRAPP) component | JGI | ISS | |
| UniRef100_A2Q3F3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Trafficking protein particle complex subunit 6B n=1 Tax=Medicago truncatula RepID=A2Q3F3_MEDTR | SoyBase | E_val: 6.00E-120 | ISS |
| UniRef100_I1JRI0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JRI0_SOYBN | SoyBase | E_val: 3.00E-129 | ISS |
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Glyma03g40243 not represented in the dataset |
Glyma03g40243 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g42850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g242500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g40243.2 sequence type=transcript gene model=Glyma03g40243 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAATTTCAATTCTGATACATTGGTCTAGATCGGGGTGAGGCAAGGGAAGCAAGGACGATGAGTATAGTATGAGTAATCAGATTCAGAGTGTATAGTGATTCTGATTCTTTCATTTTCCATAGATTAGCAAGCAATCGAGCGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAATGGTTCGGGAAGTATCAGAGAGTTGCATTGATAGCTTATTGACGGAGATGGTGGCGTGCTATTGCAACCGATTCTACGCAAACAAGCCTGAACTCGCCGCACGCCGGATCGAGGCCATTGGATATCAGGTCGGTCACCAGCTCTCTGAAAGGTATACCATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTTCATTTGTGGTCCGTATAAAAGCTTGAAGAGTTCATAGTTGTAATACTGATGATGGAAGGGGAAGCATTAATATTGTTCAAAACAATGCTTTGATGTCTGTGAGCTCTTTTGTCGTAAAATGCTCGAGTGGGGAATGTTTCTTTACGAGATATAAACTATTATATTAAATGTTATTGACTGGAATGTGTAGGAAGGGCTCCTGAGGTAGTATTTTGATAAGTGAGGATTTGGTTCTTTCAGGCGCAGATTCTATGGAGTACGATAACATCGAATTATTGGACTGTGGAAAGACGGAGAATTCCAATCATTGTAATATTGTTGCTCTTGTATGGAACCTTTTAAAACATGTACCACTTATTCGATTGCCAATTTGCAGGAGGCTGGCTTTTTTTATAAGACTGACTTAAATTTACATATTTAAATTATATTTTCTTCATATGGT >Glyma03g40243.3 sequence type=transcript gene model=Glyma03g40243 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAAGGGAAGCAAGGACGATGAGTATAGTATGAGTAATCAGATTCAGAGTGTATAGTGATTCTGATTCTTTCATTTTCCATAGATTAGCAAGCAATCGAGCGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAATGGTTCGGGAAGTATCAGAGAGTTGCATTGATAGCTTATTGACGGAGATGGTGGCGTGCTATTGCAACCGATTCTACGCAAACAAGCCTGAACTCGCCGCACGCCGGATCGAGGCCATTGGATATCAGGTATACCATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTTCATTTGTGGTCCGTATAAAAGCTTGAAGAGTTCATAGTTGTAATACTGATGATGGAAGGGGAAGCATTAATATTGTTCAAAACAATGCTTTGATGTCTGTGAGCTCTTTTGTCGTAAAATGCTCGAGTGGGGAATGTTTCTTTACGAGATATAAACTATTATATTAAATGTTATTGACTGGAATGTGTAGGAAGGGCTCCTGAGGTAGTATTTTGATAAGTGAGGATTTGGTTCTTTCAGGCGCAGATTCTATGGAGTACGATAACATCGAATTATTGGACTGTGGAAAGACGGAGAATTCCAATCATTGTAATATTGTTGCTCTTGTATGGAACCTTTTAAAACATGTACCACTTATTCGATTGCCAATTTGCAGGAGGCTGGCTTTTTTTATAAGACTGACTTAAATTTACATATTTAAATTATATTTTCTTCATATGGT
>Glyma03g40243.1 sequence type=CDS gene model=Glyma03g40243 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCGGGAAGTATCAGAGAGTTGCATTGATAGCTTATTGACGGAGATGGTGGCGTGCTATTGCAACCGATTCTACGCAAACAAGCCTGAACTCGCCGCACGCCGGATCGAGGCCATTGGATATCAGGTCGGTCACCAGCTCTCTGAAAGGTATACCATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTTCATTTGTGGTCCGTATAAAAGCTTGA >Glyma03g40243.2 sequence type=CDS gene model=Glyma03g40243 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCGGGAAGTATCAGAGAGTTGCATTGATAGCTTATTGACGGAGATGGTGGCGTGCTATTGCAACCGATTCTACGCAAACAAGCCTGAACTCGCCGCACGCCGGATCGAGGCCATTGGATATCAGGTCGGTCACCAGCTCTCTGAAAGGTATACCATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTTCATTTGTGGTCCGTATAAAAGCTTGA >Glyma03g40243.3 sequence type=CDS gene model=Glyma03g40243 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTTCATTTGTGGTCCGTATAAAAGCTTGA
>Glyma03g40243.1 sequence type=predicted peptide gene model=Glyma03g40243 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVREVSESCIDSLLTEMVACYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMDRPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLARMSIDPSTENVSPVEDITSPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA* >Glyma03g40243.2 sequence type=predicted peptide gene model=Glyma03g40243 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVREVSESCIDSLLTEMVACYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMDRPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLARMSIDPSTENVSPVEDITSPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA* >Glyma03g40243.3 sequence type=predicted peptide gene model=Glyma03g40243 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLARMSIDPSTENVSPVEDITSPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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