Glyma03g40230 - SoyBase

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Report for Sequence Feature Glyma03g40230

Feature Type:	gene_model
Chromosome:	Gm03
Start:	46032032
stop:	46036989
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g40230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27240	AT	Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein \| chr5:9597552-9600866 FORWARD LENGTH=1104	SoyBase	E_val: 8.00E-160	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
PTHR24077	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24077:SF88	Panther		JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF11926	PFAM	Domain of unknown function (DUF3444)	JGI		ISS
UniRef100_A2Q3G0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=A2Q3G0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JRH7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRH7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g40230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g40230

Paralog	Evidence	Comments
Glyma19g42816	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g40230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g242300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g40230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g40230

Limit To All Plant Sequences

>Glyma03g40230.1   sequence type=CDS   gene model=Glyma03g40230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGCAACAAGGATGAGGCTATAAGGGCTAGGCAGATTGCTGAAAATAAGATGCAAGCTGGTGACTTTGAAGGGGGGCTGAAATTTGCTACGAAAGCCCAAAGGCTGTTTCCTGAGATTCAGAACATTCTTCAGATCCTTGCTGTTTGTGAGGTTCACTGTGCTGCACAGAAGAAACACTCTGGGTCTGACATGGACTGGTATGGAATTCTTAAGATTGAAAAGTCCGCCGATGAAGCAACCATAAAGAAACAGTATAGGAAGCTTGCACTGCTACTTCATCCTGACAAAAATAAATCTGATGGTGCAGAGGCTGCTTTCAAGTTGATTGGTGAAGCTAACAGAGTGTTGAGTGACCAAACAAAGCGTGCTTTGTATGACTTAAAGTTTGGAGTTCCTGTGGGAAATACAGCAGCTAAGGTTCCACCTCGTCACCCAAATGGAAATGCTTCCGGGATGGGATGTGATGGCACTGCAAGAAATTATCAGAACAGTTTTTCTTCACAATACCAAGCTTGGAATTCATATCATCGGACTGATAATCAGACATTCTGGACATGTTGCCCTCATTGTAATACTAGATATCAATATGTCATAACCATTTTAAATCATACCATACGCTGTCAACATTGTTCTAAATCCTTTACAGCTCATGATATGGGGAACCACAACGTGTCACCAGGATATTGGTCACCATTTAATAACCAGAAAGAGCCTCCAAAACATGCATCGTCAAAAGAAGCTTCAAAAAGCAATGGTGGAAAGTCTTCTGGTAGAGAACAGGAGGGTGTATCCATGTCAAAATGCTCTGCTGGTATTGGTACCCATTCTAAAGTTGCAAAGAGAAGAGATAGTCATGCGGCTGCAGGAGTGACAAAGGCTGGTGTTGGGATGTCCAATCCCACTAATACCAAAGCCAAGGAATCGCAAGCCTCAACAAAGGTTGGACATAAGAGAGCAAGGCAGTCAACATCAGATGATGATAACAAAGCTGCAAATGGTAAAGGCGTGAAAGATGCTAAGGTTCAAAAAAATAGGGTTGATCCTAATAGGAGATCTTCAAGGAAAAAACAGCATGTTTCGTACACAGAAAATGATAAAGATGGTGATTTTGGGAATTCTTCCAAAAGGCCAAGGCACCATGAATCCAGTAACAACAATCCAGCCTCTTTTACTGACGGTGTGGGTGGTCAGAATGGAAAGATAAGAAATAAAGCAAGTGCACCGCCTGAAGAAACTGTTTTAAGGAATAAGACCAAAGTTGAGCAGACAAATGTGCTAAGAAAGGAGGCATCCAACTCAGATCTTAATGATAGAAAGTCAAAAGCTGACAATTGTTCTCCACTGAAGTCAAATTTACCTCCCAGTTCAGAGATTTGCTGTCCTGATCCAGACTTCAGTGATTTTGAGAGAGATAAGGCAGAGGGTTGTTTTGCTGTTAATCAATTATGGGCCATTTTTGATAATACTGATAGTATGCCAAGATTCTATGCTCTCGTCAAGAAAGTGTACTTCCCTTTCAAGTTGCGGATTACTTGGCTGGAACCTGACTCAGATGACCAAGGTGAGATTGACTGGCATGAAGCAGGCTTGCCTGTTGCTTGTGGTAAGTTCAAACTTGGTCAGTCTCAGAGAACTTCAGACCGCTTTATGTTCTCTCATCAGGTGCATTGCATAAAAGGAAGTGACAGTGGTACTTATCTGGTATATCCAAAGAAGGGAGAAACTTGGGCAATTTTCAGACATTGGGATCTTGGATGGAGTTCTGATCCAGAAAAGCATTCGGAGTATCAATTTGAATATGTGGAAGTTCTATCTGATTTTGATGAAAATGCCGGCATTAAAGTTGCTTATCTTAGCAAACTGAAAGGGTTTGTTAGTCTCTTCCAGCGAACTGTGCTAAACAGAATTAGCTTATTTTGTATTTTACCTAATGAGCTTTATAAGTTCTCTCACCGGATTCCTTCATATAAGATGACAGGTGCTGAAAGGCAAGATGTTCCAAGAGGATCTTTTGAACTTGATCCTGCTGGTCTGCCTAATAGTCTTTCTGAAGTTGGTGATCCTGGTGTTGTGAAGATGGATGGAGTCAATTGTTCGCACCATGAATACTCGAAGTGTAAAGTTGAAGAGGCAATGTCTAATGATAGTATTCACAAAGCAAAGTTGCGAGAGAGTATTGGTTCTGAAAGAGTAGCACAAATCCTCAGAAGATCACCAAGGTCAAGTCAAAAAAGTATGGACAATGGTCAAGCAAACACTAGTCAATATACAGTCAGAAAGGATGACATAAACATTGGCCACAGGGATGACAGTCCACCAGAGGGAAACACTGCTGCATTTCAGACTATTAAGAGGAAGGTCAAGACACCTCAGAAACATGAGAAAAATAATTATGAAGGAGAGGCATTGAAAGCCCGAAAGTCACCTAGAGATTTAAGCAAGAAAAATGCTCAAGGAGATGCAGGTGAATGGACAGCAGGCAAGAAGACTGATAACCATTCAAGCAACAGCAAAAATGTGAAGGTCAGCAATATTCCTCAGTCAGTGGGAGCATCATGTTATGGCTTTAAGAAGGAAAAATCTGAAGAGATGTTTCAGTGTGGTCAGATATGGGCAATATATGGTGATAGGGATCATATGCCTGATACTTATGCTCAAATTAGGATGATTGAATGCACTCCTAATTTTAGATTGCAGGTGTACATGCTTGAACCCTGCCCACCACCAAATGACTTAAAAAGAACAATATCTTGTGGCACCTTTTCAGTTAAAGAAGCCAAATTACGGATGCTTTCTCTCTCTGCATTCTCTCATCAATTAAAAGCTGAACTTGTGGCAAATAATAGATATGAAATTTATCCTAGAAAATGTGAGATTTGGGCTCTATACAAGGACCAGAACTATGAACTGACTTCTTCAAATCAGGGCAGAGGTGAATGTCATATAGTAGAAGTATTAGCTGATAGTTACCAGAGTATCCAAGTTGTTGTTCTAGTGCCGCATGGCAACTCTGGGACAATTTTCAAGGCTCCTAGAATCCAGAGATCTAAAACTGGTGTAATTGAAATATTAAGAAAAGAGGTTGGCAGATTTTCACATCAGATTCCTGCTTTTCAGCACAGCGACAATGTTCATCTCAGAGGGTGTTGGGAGCTTGATCCTTCATCAGTTCCTGGTTCTTTCATACCAATAGACTGA

Predicted protein sequences of Glyma03g40230

Limit To All Plant Sequences

>Glyma03g40230.1   sequence type=predicted peptide   gene model=Glyma03g40230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECNKDEAIRARQIAENKMQAGDFEGGLKFATKAQRLFPEIQNILQILAVCEVHCAAQKKHSGSDMDWYGILKIEKSADEATIKKQYRKLALLLHPDKNKSDGAEAAFKLIGEANRVLSDQTKRALYDLKFGVPVGNTAAKVPPRHPNGNASGMGCDGTARNYQNSFSSQYQAWNSYHRTDNQTFWTCCPHCNTRYQYVITILNHTIRCQHCSKSFTAHDMGNHNVSPGYWSPFNNQKEPPKHASSKEASKSNGGKSSGREQEGVSMSKCSAGIGTHSKVAKRRDSHAAAGVTKAGVGMSNPTNTKAKESQASTKVGHKRARQSTSDDDNKAANGKGVKDAKVQKNRVDPNRRSSRKKQHVSYTENDKDGDFGNSSKRPRHHESSNNNPASFTDGVGGQNGKIRNKASAPPEETVLRNKTKVEQTNVLRKEASNSDLNDRKSKADNCSPLKSNLPPSSEICCPDPDFSDFERDKAEGCFAVNQLWAIFDNTDSMPRFYALVKKVYFPFKLRITWLEPDSDDQGEIDWHEAGLPVACGKFKLGQSQRTSDRFMFSHQVHCIKGSDSGTYLVYPKKGETWAIFRHWDLGWSSDPEKHSEYQFEYVEVLSDFDENAGIKVAYLSKLKGFVSLFQRTVLNRISLFCILPNELYKFSHRIPSYKMTGAERQDVPRGSFELDPAGLPNSLSEVGDPGVVKMDGVNCSHHEYSKCKVEEAMSNDSIHKAKLRESIGSERVAQILRRSPRSSQKSMDNGQANTSQYTVRKDDINIGHRDDSPPEGNTAAFQTIKRKVKTPQKHEKNNYEGEALKARKSPRDLSKKNAQGDAGEWTAGKKTDNHSSNSKNVKVSNIPQSVGASCYGFKKEKSEEMFQCGQIWAIYGDRDHMPDTYAQIRMIECTPNFRLQVYMLEPCPPPNDLKRTISCGTFSVKEAKLRMLSLSAFSHQLKAELVANNRYEIYPRKCEIWALYKDQNYELTSSNQGRGECHIVEVLADSYQSIQVVVLVPHGNSGTIFKAPRIQRSKTGVIEILRKEVGRFSHQIPAFQHSDNVHLRGCWELDPSSVPGSFIPID*

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