SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08860 | AT | Annotation by Michelle Graham. TAIR10: Calcium-dependent phospholipid-binding Copine family protein | chr1:2842153-2846138 FORWARD LENGTH=584 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0010186 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular defense response | SoyBase | N/A | ISS |
| GO:0019725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular homeostasis | SoyBase | N/A | ISS |
| GO:0060548 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cell death | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005544 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium-dependent phospholipid binding | SoyBase | N/A | ISS |
| KOG1327 | KOG | Copine | JGI | ISS | |
| PTHR10857 | Panther | COPINE | JGI | ISS | |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| PF07002 | PFAM | Copine | JGI | ISS | |
| UniRef100_A2Q3G1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: C2; von Willebrand factor, type A; Copine n=1 Tax=Medicago truncatula RepID=A2Q3G1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023377B4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023377B4 related cluster n=1 Tax=unknown RepID=UPI00023377B4 | SoyBase | E_val: 0 | ISS |
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Glyma03g40220 not represented in the dataset |
Glyma03g40220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g242200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g40220.1 sequence type=CDS gene model=Glyma03g40220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGGGTGTTTTTCTGATGTGAAAGGAGGGAAGCAAGCGGTGGGAGTGGGAGGGAATGGAGCCCACAACGACGCCCTGGATTTGTTTTACAAGTCTCATCAAATGTTCACACAACTTGAGTTATCTCTTTCAGCATCCAACTTACTTGATCGAGACATTACATCAAAGAGTGATCCCATGGTTGTAGTGTATGCAAAGAAAAGAGATGGTAAAATGGAAGAAATAGGTCGCACTGAAGTCATTCTGAATTGTTTAAATCCAGAGTGGATTGAGAAAATTAGTGTTGCTTTTCACTTTGAAATTGTGCAACCACTTGAATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACGACACTAAAACTGGGAGATCAAGACTTCCTTGGAATGGCCAGTTGCACGTTATCAGAGATTGTGACTAAACCAAGTAGGAGCTTATCATTAAGGCTCAAAAACAAAAGTAGGCATGATGTTTTGAGAAACCTAGGGGAAATTACTGTTCATGCTGAAGAGACCGTTGCTTCAAGGAGTGCAGTTGAGATGGTCTTACGTTGTACTCACTTGGATAACAAGGACTTTTTCTCTAAAAGTGACCCTTTTCTAAGAATATCAAGAATGGTTGAGACTGGAGGTTATGTTCCTATATGCAAGACTGAAGTTATCGACGACAATTTAAATCCAAAATGGAAACCACTTTGTCTTAGTGTCCAGAAATTTGGAAATAAAGATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGGTAAAATGCAGAAGTCAGTAGCAGACCTTGAAAAGCTGTACAAAGAGAGAACAGGCGCAAATTTTGTCATACCATCCACACGCCACAGACAAGAGAAGGTTCTGAAGGGTCAACTGTTTGTGGATCAATATTGCGTAAAAGAGCAAATCAGTTTTATTGACTACATATCTAGTGGTTTTGAGCTGAACTTCATGGTTGCTATAGATCTCACGGCTTCAAATGGAAATCCTCACCATTCAGATTCGTTGCATTACATTGATGCATATGGCCGGTTAAATTCATACCAAAAGGCTGTAATGGAGGTTGGAGAAGTTATTCAGTTTTATGATTCTGATAGGCAGTTTCCTGCTTGGGGTTTTGGAGGGAAGCTACCTGGTGGTACTGTATCCCACTGTTTTAATCTAAATGGGAATCCTGGTGCCTCTGAGGTTGTAGGAGTTGAAGGCATAATGGATGCTTATGCCAGTGCTTTACGCAGCGTCACTCTCTCAGGACCCACTTTATTTGGTCCAGTTATCAACATGGCTGCACAAATGGCTGTCCAGTCCATCACATCACATAACAACACCAAGTATTATGTATTGCTTATCATAACGGATGGGGTTGTTACGGATCTTCAAGAAACAATAAATGCTGTGGTTAAAGCATCTGATCTTCCCCTGTCAATTCTTATAGTTGGAGTTGGAAATGCTGATTTCAAAAGCATGGAGGTGCTGGATGCTGATAATGGGCGTCGGTTAGAGAGTCCCACCGGTCGCGTGGCTACACGAGATATAGTGCAATTTATCCCTATGAGAGAAGTACAGAGTGGGCAGATATCTGTTGTGCAAGCTCTTTTGGAAGAACTACCTGATCAATTTTTGTCTTTTATGCGAAGCAGGGACGTCAAGCCACTACCTTGTTCCGATTTCCCTCAAGCATCATCATCCACTGTGAAATAG
>Glyma03g40220.1 sequence type=predicted peptide gene model=Glyma03g40220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGCFSDVKGGKQAVGVGGNGAHNDALDLFYKSHQMFTQLELSLSASNLLDRDITSKSDPMVVVYAKKRDGKMEEIGRTEVILNCLNPEWIEKISVAFHFEIVQPLEFHVYDVDTKYHSVPTTTLKLGDQDFLGMASCTLSEIVTKPSRSLSLRLKNKSRHDVLRNLGEITVHAEETVASRSAVEMVLRCTHLDNKDFFSKSDPFLRISRMVETGGYVPICKTEVIDDNLNPKWKPLCLSVQKFGNKDNPLLIECFDFNSSGNHVLIGKMQKSVADLEKLYKERTGANFVIPSTRHRQEKVLKGQLFVDQYCVKEQISFIDYISSGFELNFMVAIDLTASNGNPHHSDSLHYIDAYGRLNSYQKAVMEVGEVIQFYDSDRQFPAWGFGGKLPGGTVSHCFNLNGNPGASEVVGVEGIMDAYASALRSVTLSGPTLFGPVINMAAQMAVQSITSHNNTKYYVLLIITDGVVTDLQETINAVVKASDLPLSILIVGVGNADFKSMEVLDADNGRRLESPTGRVATRDIVQFIPMREVQSGQISVVQALLEELPDQFLSFMRSRDVKPLPCSDFPQASSSTVK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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