SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g40050

Feature Type:gene_model
Chromosome:Gm03
Start:45919398
stop:45925524
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g40050
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27380AT Annotation by Michelle Graham. TAIR10: glutathione synthetase 2 | chr5:9668211-9670912 REVERSE LENGTH=539 SoyBaseE_val: 0ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006750GO-bp Annotation by Michelle Graham. GO Biological Process: glutathione biosynthetic process SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004363GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione synthase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016874GO-mf Annotation by Michelle Graham. GO Molecular Function: ligase activity SoyBaseN/AISS
KOG0021 KOG Glutathione synthetase JGI ISS
PTHR11130Panther GLUTATHIONE SYNTHETASE JGI ISS
PF03199PFAM Eukaryotic glutathione synthase JGI ISS
PF03917PFAM Eukaryotic glutathione synthase, ATP binding domain JGI ISS
UniRef100_I1JRF8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JRF8_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9FV26UniRef Annotation by Michelle Graham. Most informative UniRef hit: Homoglutathione synthetase n=1 Tax=Phaseolus vulgaris RepID=Q9FV26_PHAVU SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g40050
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g40050
ParalogEvidenceComments
Glyma19g42600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g40050 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g240600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g40050
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g40050
>Glyma03g40050.1   sequence type=CDS   gene model=Glyma03g40050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATGGGTAGTAGATCTGGCGGCTTGGTTTGTTCTACTTGTTCTTACACTGGGATTAGGACGAGACGTTTCTACACTAACAATAATACCTTTCCCTCTTTCTCCTTTACCTTCCCCCACCAACCTCAATCATTCTCTTTCCCTAAACCTCTCAGACTCATGTCTCAGCCTTTGACCACCAACTCTGCTGATGGTGATTCCTCCGTCGCCGCACCTCCCATCCTCTTCGATTATCATCTTATCGACCAAAAACTTCTCCAAAACATAGTCTACGATGCTCTTGTCTGGAGCACCCTCAACTGCCTCCTTGTTGGTGACAAATCAGTTCAGAGATCAGGAACAGTTCCTGGTGTTGGCCTGGTGCATCTCCCGCTTTCTTTATTACCTGGGCCATTTCCTGAAAATCATTGGAAGCAAGCGTGCGAATTAGCTCCTATATTTAATGAACTTGTTGATCGGGTGAGTTTGGATGGGAAATTTCTCCAGGAATCTCTCTCCAGAACTAAGAATGCGGACGAATTTACCTCAAGACTTTTAGATATTCATTCTAAGATGCTACAGATTAACAAAAAAGAGGACATACGCATGGGAATAGTTCGTTCAGATTATATGATTGATGAGAAGACTAAATCACTTTTGCAAATAGAGATGAACACGATTTCCACTTCATTTGCTTTGATTGGTTGCCTTATGACTGGACTTCATAAGAGCTTACTTTCTCAATATGGAAAGTTCCTTGGACTAGATTCCAATAGGGTTCCTGCCAATAATGCTGTTGATCAGTCTGCAGAGGCCTTGGCTAAAGCTTGGAGTGAATATAACAATCCCAGGGCTGCAATTCTGGTCGTGGTTCAGGTTGAAGAAAGAAACATGTACGAGCAGCATTATATTTCTGCACTTCTAAGAGAAAAACATCATATTAGAAGCATACGCAAAACATTGACAGAAATAGATCAGGAAGGAGAAATTCTGCCAGATGGAACACTTTCTGTGGACGGACAAGAAATTTCAGTTGTTTACTTCCGGGCTGGCTACACACCAAAGGACTATCCTTCAGAATCAGAATGGAGAGCTAGGCTACTGATGGAACAATCTTCTGCTATCAAATGCCCTACTATATCTTATCATTTGGTTGGCACCAAAAAGATTCAACAGGAACTTGCAAAGCCTGGTGTTCTTGAGAGGTTTGTAGAAAACAAAGACCACATTGCCAAATTGCGTGCATGCTTTGCAGGATTGTGGAGTTTGGAAGACTCGGATATTGCTAAAAAAGCAATTGAAAATCCAGAGTTATTTGTGATGAAGCCTCAAAGAGAAGGAGGAGGAAACAATATTTATGGTGATGAGTTGAGGGAAACCCTCCTTAAATTACAGGAAGCAGGTTCTGAAGAAGATGCAGCATACATCCTTATGCAGAGGATATTTCCAGCCACTTCTCCAGCAATTTTGGTGCGTGATGGTAATTGGGATATGGGTCATGTCATTTCAGAAGCTGGAGTATTTGGTACTTATTTAAGGAATAAGGATAAGGTTATCATTAATAACGAAAGTGGCTATATGGTGCGTACAAAAATATCATCATCTTATGAAGGTGGAGTTTTGCCTGGTTTTGGAGTGGTAGATACTGTATACCTAACTTGA
Predicted protein sequences of Glyma03g40050
>Glyma03g40050.1   sequence type=predicted peptide   gene model=Glyma03g40050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMGSRSGGLVCSTCSYTGIRTRRFYTNNNTFPSFSFTFPHQPQSFSFPKPLRLMSQPLTTNSADGDSSVAAPPILFDYHLIDQKLLQNIVYDALVWSTLNCLLVGDKSVQRSGTVPGVGLVHLPLSLLPGPFPENHWKQACELAPIFNELVDRVSLDGKFLQESLSRTKNADEFTSRLLDIHSKMLQINKKEDIRMGIVRSDYMIDEKTKSLLQIEMNTISTSFALIGCLMTGLHKSLLSQYGKFLGLDSNRVPANNAVDQSAEALAKAWSEYNNPRAAILVVVQVEERNMYEQHYISALLREKHHIRSIRKTLTEIDQEGEILPDGTLSVDGQEISVVYFRAGYTPKDYPSESEWRARLLMEQSSAIKCPTISYHLVGTKKIQQELAKPGVLERFVENKDHIAKLRACFAGLWSLEDSDIAKKAIENPELFVMKPQREGGGNNIYGDELRETLLKLQEAGSEEDAAYILMQRIFPATSPAILVRDGNWDMGHVISEAGVFGTYLRNKDKVIINNESGYMVRTKISSSYEGGVLPGFGVVDTVYLT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo