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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54790 | AT | Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:20441124-20442634 REVERSE LENGTH=383 | SoyBase | E_val: 0 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| PTHR22835 | Panther | ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN | JGI | ISS | |
| PTHR22835:SF39 | Panther | LATERAL SIGNALING TARGET PROTEIN 2 | JGI | ISS | |
| PF00657 | PFAM | GDSL-like Lipase/Acylhydrolase | JGI | ISS | |
| UniRef100_G7KZP6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=2 Tax=Medicago truncatula RepID=G7KZP6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JRF6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JRF6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g40021 not represented in the dataset |
Glyma03g40021 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g42560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g240300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g40021.2 sequence type=transcript gene model=Glyma03g40021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGAGCTATAATTGGTATCAGCCTACCTAGTTGGTAGTTGGTTCCATTGGACACAAGTGAAAACTACGTGGCATGGCTTCCAAGAATGTAATTTTTCAATTTATCTTATTTACCATCTGTTTGGCTATGGCAAATTCGGTCGAGTTCAAATATCCCGCAGTTTTCAACTTTGGTGATTCAAATTCGGACACAGGAGAACTTGCTGCAGGGTTGGGCTTTCTGGTCGCTCCACCTAATGGACAGGACTACTTCAAAATTCCTTCTGGGAGGTTCTGCGATGGCCGTCTCATAGTGGACTTCCTAATGGATGCTATGGACTTGCCATTCCTAAATGCCTATCTTGATTCGTTAGGTTTGCCAAATTTTAGGAAGGGATGCAACTTTGCCGCAGCAGCTGCAACTATACTTCCAGCCACTGCATCATCCCTCTGCCCCTTCTCCTTTGGGGTTCAGGTGTCTCAGTTCCTCCGATTCAAAGCTCGGGCCCTTGAATTGATCGCTAAAGGCAGGAAATTTGATAAGTACGTCCCTGATGAAAATGTTTTTGAGAAGGGATTGTACATGTTTGATATTGGCCAGAATGATCTTGCTGGAGCATTTTATTCCAAAACATTAGACCAAATACTTGCCTCAATCCCCACAATTCTTTTAGAGCTTGAAAAGGGAATTAAGAATCTCTATGACCAGGGGGCTAGATATTTCTGGATACACAATACAGGTCCTCTCGGATGCTTGCCTCAGAATATTGCCAAATTTGGAACTGATTCATCAAAGCTTGACGAACTAGGGTGTGTTAGTTCACACAACCAAGCTGCTAAAACCTTTAACCTACAGCTACATGCTCTCTGTACTAAATTGCAGGGCCAATATCCAGATTCAAATGTCACATACGTTGATATCTTCACTATAAAATCAAACCTCATTTCAAACTTTTCTAGATACGGGTTTGAACAACCTATTATGGCTTGTTGTGGATACGGAGGTCCACCACTAAACTATGACAGTCGAGTTTCCTGTGGGGAAACCAAGACCTTTAACGGGACCACAATTACAGCAAAAGCTTGTAATGATACCAGTGAGTACATAAGTTGGGATGGGATTCATTACACTGAGACTGCAAATCAATATGTAGCATCACAAATTCTCACTGGAAAGTACTCGGACCCTCCTTTCTCAGACAAAATGCCATTCCTACTTAAGCTCAAGTTCTAAATACCCCATTATATTTATTGTTACTATTATTTGATTCTTTATGGTATCGTGAAAGCTATAGCTGATTGTAACTTTGAATGACAGTCAAGCTCTTACTAATGAATATGTTTTAAAGATTGGTCCCATTGACATGGTAACATGGTCTGTGTGATAATGTTCAAGGATTGGTAATTGAACACATTCAGACTTCATGGTTCATTTGTATGCTATATACTATATAAAAGGGCCTT
>Glyma03g40021.1 sequence type=CDS gene model=Glyma03g40021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCCAACACATGTATCATTCGAATTCTTACCGTCATTGCCATCTGCATACCTCGTGCCAAATCCTTCCACTTGGATTTTCCAGCAGTTTTTAACTTTGGTGATTCAAATTCTGATACTGGTGCTCTTATTGCCGCTGCTTTTGAGAGCCTTTACCCACCAAATGGACAAACTTACTTCCAAAAACCATCAGGGAGATACTCTGATGGCCGTCTCACCATCGATTTCCTTATGGATGCTATGGACTTGCCATTCCTAAATGCCTATCTTGATTCGTTAGGTTTGCCAAATTTTAGGAAGGGATGCAACTTTGCCGCAGCAGCTGCAACTATACTTCCAGCCACTGCATCATCCCTCTGCCCCTTCTCCTTTGGGGTTCAGGTGTCTCAGTTCCTCCGATTCAAAGCTCGGGCCCTTGAATTGATCGCTAAAGGCAGGAAATTTGATAAGTACGTCCCTGATGAAAATGTTTTTGAGAAGGGATTGTACATGTTTGATATTGGCCAGAATGATCTTGCTGGAGCATTTTATTCCAAAACATTAGACCAAATACTTGCCTCAATCCCCACAATTCTTTTAGAGCTTGAAAAGGGAATTAAGAATCTCTATGACCAGGGGGCTAGATATTTCTGGATACACAATACAGGTCCTCTCGGATGCTTGCCTCAGAATATTGCCAAATTTGGAACTGATTCATCAAAGCTTGACGAACTAGGGTGTGTTAGTTCACACAACCAAGCTGCTAAAACCTTTAACCTACAGCTACATGCTCTCTGTACTAAATTGCAGGGCCAATATCCAGATTCAAATGTCACATACGTTGATATCTTCACTATAAAATCAAACCTCATTTCAAACTTTTCTAGATACGGGTTTGAACAACCTATTATGGCTTGTTGTGGATACGGAGGTCCACCACTAAACTATGACAGTCGAGTTTCCTGTGGGGAAACCAAGACCTTTAACGGGACCACAATTACAGCAAAAGCTTGTAATGATACCAGTGAGTACATAAGTTGGGATGGGATTCATTACACTGAGACTGCAAATCAATATGTAGCATCACAAATTCTCACTGGAAAGTACTCGGACCCTCCTTTCTCAGACAAAATGCCATTCCTACTTAAGCTCAAGTTCTAA >Glyma03g40021.2 sequence type=CDS gene model=Glyma03g40021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCAAGAATGTAATTTTTCAATTTATCTTATTTACCATCTGTTTGGCTATGGCAAATTCGGTCGAGTTCAAATATCCCGCAGTTTTCAACTTTGGTGATTCAAATTCGGACACAGGAGAACTTGCTGCAGGGTTGGGCTTTCTGGTCGCTCCACCTAATGGACAGGACTACTTCAAAATTCCTTCTGGGAGGTTCTGCGATGGCCGTCTCATAGTGGACTTCCTAATGGATGCTATGGACTTGCCATTCCTAAATGCCTATCTTGATTCGTTAGGTTTGCCAAATTTTAGGAAGGGATGCAACTTTGCCGCAGCAGCTGCAACTATACTTCCAGCCACTGCATCATCCCTCTGCCCCTTCTCCTTTGGGGTTCAGGTGTCTCAGTTCCTCCGATTCAAAGCTCGGGCCCTTGAATTGATCGCTAAAGGCAGGAAATTTGATAAGTACGTCCCTGATGAAAATGTTTTTGAGAAGGGATTGTACATGTTTGATATTGGCCAGAATGATCTTGCTGGAGCATTTTATTCCAAAACATTAGACCAAATACTTGCCTCAATCCCCACAATTCTTTTAGAGCTTGAAAAGGGAATTAAGAATCTCTATGACCAGGGGGCTAGATATTTCTGGATACACAATACAGGTCCTCTCGGATGCTTGCCTCAGAATATTGCCAAATTTGGAACTGATTCATCAAAGCTTGACGAACTAGGGTGTGTTAGTTCACACAACCAAGCTGCTAAAACCTTTAACCTACAGCTACATGCTCTCTGTACTAAATTGCAGGGCCAATATCCAGATTCAAATGTCACATACGTTGATATCTTCACTATAAAATCAAACCTCATTTCAAACTTTTCTAGATACGGGTTTGAACAACCTATTATGGCTTGTTGTGGATACGGAGGTCCACCACTAAACTATGACAGTCGAGTTTCCTGTGGGGAAACCAAGACCTTTAACGGGACCACAATTACAGCAAAAGCTTGTAATGATACCAGTGAGTACATAAGTTGGGATGGGATTCATTACACTGAGACTGCAAATCAATATGTAGCATCACAAATTCTCACTGGAAAGTACTCGGACCCTCCTTTCTCAGACAAAATGCCATTCCTACTTAAGCTCAAGTTCTAA
>Glyma03g40021.1 sequence type=predicted peptide gene model=Glyma03g40021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNTCIIRILTVIAICIPRAKSFHLDFPAVFNFGDSNSDTGALIAAAFESLYPPNGQTYFQKPSGRYSDGRLTIDFLMDAMDLPFLNAYLDSLGLPNFRKGCNFAAAAATILPATASSLCPFSFGVQVSQFLRFKARALELIAKGRKFDKYVPDENVFEKGLYMFDIGQNDLAGAFYSKTLDQILASIPTILLELEKGIKNLYDQGARYFWIHNTGPLGCLPQNIAKFGTDSSKLDELGCVSSHNQAAKTFNLQLHALCTKLQGQYPDSNVTYVDIFTIKSNLISNFSRYGFEQPIMACCGYGGPPLNYDSRVSCGETKTFNGTTITAKACNDTSEYISWDGIHYTETANQYVASQILTGKYSDPPFSDKMPFLLKLKF* >Glyma03g40021.2 sequence type=predicted peptide gene model=Glyma03g40021 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASKNVIFQFILFTICLAMANSVEFKYPAVFNFGDSNSDTGELAAGLGFLVAPPNGQDYFKIPSGRFCDGRLIVDFLMDAMDLPFLNAYLDSLGLPNFRKGCNFAAAAATILPATASSLCPFSFGVQVSQFLRFKARALELIAKGRKFDKYVPDENVFEKGLYMFDIGQNDLAGAFYSKTLDQILASIPTILLELEKGIKNLYDQGARYFWIHNTGPLGCLPQNIAKFGTDSSKLDELGCVSSHNQAAKTFNLQLHALCTKLQGQYPDSNVTYVDIFTIKSNLISNFSRYGFEQPIMACCGYGGPPLNYDSRVSCGETKTFNGTTITAKACNDTSEYISWDGIHYTETANQYVASQILTGKYSDPPFSDKMPFLLKLKF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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