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Report for Sequence Feature Glyma03g39860

Feature Type:gene_model
Chromosome:Gm03
Start:45799618
stop:45801932
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g39860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G54860AT Annotation by Michelle Graham. TAIR10: Glycoprotein membrane precursor GPI-anchored | chr1:20457522-20458434 REVERSE LENGTH=200 SoyBaseE_val: 2.00E-44ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0016114GO-bp Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C6SYM8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYM8_SOYBN SoyBaseE_val: 3.00E-144ISS
UniRef100_Q2HTL7UniRef Annotation by Michelle Graham. Most informative UniRef hit: GPI-anchored protein, putative n=1 Tax=Medicago truncatula RepID=Q2HTL7_MEDTR SoyBaseE_val: 3.00E-81ISS

Expression Patterns of Glyma03g39860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g39860
ParalogEvidenceComments
Glyma19g42420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g39860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g238700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g39860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g39860
>Glyma03g39860.1   sequence type=CDS   gene model=Glyma03g39860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGACGCCTTCAAACTTTGCATCTTCCTTCTTGCGTCGATCTGTGCTTTCCTAGTCTTTTCTAATCCAGTGCTGTGTAGTGATAAGGAGGACAGTGTATTCAAGGGAATCAACAGCTACAGGCAAACACGGAGCCTGGTACCCCTGAGCCAAGTTTCGAAGGCAACATGTTTGGCTGATGAAGTTGCAGAAGAAATAGAGAAGATGCCCTGTGAAAACGTGAACCAATACTACCCTTCATCTGTTCCTGGTAGTGGGAACCTCAAAATCCCAAACTTGCAGAAGCACATAAATAAATGTGACATTAACTTCAACACCACCACTGATGGGGTCATTCTCCCCGTTTGTGTCTCCAAGCTGGAACCAACCATTGTGCTCTCTAATTACACTCATTCTGATCGTTACGCACAGTTTCTCAACAATTCCAAGTACACTGGAGCAGGGCTTGGTTCTGAGGATGATTGGATGGTTCTTGTTCTCACCACCAACACTACCACTGGAAGTTTCTCTGCTGCTGCAACTTCTGTTCGTGCTTATGCTGCTTCTGTGGACTTCTTGCTCTTTGTTTCGTTGTTTGTGCTCATCAACTACCTTGATTGA
Predicted protein sequences of Glyma03g39860
>Glyma03g39860.1   sequence type=predicted peptide   gene model=Glyma03g39860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDAFKLCIFLLASICAFLVFSNPVLCSDKEDSVFKGINSYRQTRSLVPLSQVSKATCLADEVAEEIEKMPCENVNQYYPSSVPGSGNLKIPNLQKHINKCDINFNTTTDGVILPVCVSKLEPTIVLSNYTHSDRYAQFLNNSKYTGAGLGSEDDWMVLVLTTNTTTGSFSAAATSVRAYAASVDFLLFVSLFVLINYLD*






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