Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma03g39840): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma03g39840): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma03g39840
Feature Type: gene_model
Chromosome: Gm03
Start: 45785096
stop: 45789687
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g39840
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G48240 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). | chr5:19559301-19561153 FORWARD LENGTH=309
SoyBase E_val: 5.00E-84 ISS
GO:0001510 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA methylation
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005730 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleolus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2974
KOG
Uncharacterized conserved protein
JGI ISS
PTHR13245 Panther
FAMILY NOT NAMED
JGI ISS
PTHR13245:SF1 Panther
gb def: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIF21
JGI ISS
PF07890 PFAM
Rrp15p
JGI ISS
UniRef100_F4WGD7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RRP15-like protein n=1 Tax=Acromyrmex echinatior RepID=F4WGD7_ACREC
SoyBase E_val: 5.00E-10 ISS
UniRef100_I1JRD2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRD2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g39840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma03g39840
Paralog Evidence Comments
Glyma19g42400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g39840 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g238300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g39840
Transcripts of Glyma03g39840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g39840.2 sequence type=transcript gene model=Glyma03g39840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACCGCGTTCTTCACTCTGCCACCGCAAACCCTTCCTCACAGCACTCATCGATTCTTTTGGTGCCGTATTTGTCTATTCGGTTGAAGTTGAATAATAGAACATTCCATGGCTGAAGAAATGAAAATGGTAGAACCTGGAAGAGGTAAGAGGAAGTTTTTCAAAACGCAAGGCCATAAAAAGTCAAGTAAGAAAGCAAAAGTGATGCCACCACAACATGGACAAAAGAAAGTTAAAATAGACAAAAAAATGAAGAAACTTTTCCGCAAGCGAGCACGGGAGTATAATTCTGATGATGAAGAAGATGATGAGGCCACTGTCCCTGCTACCTTAGAGCCTAAAAGTCTGGCATCTATCACCAATAAAAGAAATGACAAGGATGGCATAGAAAGTGAGGATAGGTCTGAGGATGAAGGAGCTGCTGGACCACAAAAAACATGGAATAAGAATGCTACTGATATGAATTATCATAGCTCTGATGATGAAGGGGAAGATGATGATGAAATTCAGCCAGGAATTACAAAATTCACGGAAGGATGTAGAGCATTCAAGATGGCCTTTAGGAATCTTATGAAGAAGAGTGTTCCTGACGACATGTTGGGTCCAATATTGTCAGGGCAAAGGAAACTTGTTGTAGATAAACTTGCAGAAGAGGAAGCAGAACGCAAGGTCAAGGGAGAGGCCAAAAAGGAAAAGCAGATGGTAGTTTTAAATTTCAAGTTGACTGATTTTAATGTTATTCAAAGTAGTATTGTCAATTTATTTGTATCCTCAGTTATTGTCACCCTTAAGTCTTGTATAGTAATCTTATTGCTTGTTACAGTTGGCAGAAAAGGGGCATGTCAAACCTGCTACTTACTTGGATTCACATGAAAAGTTTTTAATAAGTGTTGCTACAAAAGGAGGTAAATGATTTGGATTTTCTTTTAAAGAAAAATCTATGGCCTTTTATTCTTTTTGATGACTTGCATTTTCCTGTTACTGATTTGGACTATTGTCATGACCATGCATCAAATTGGATTACTTTCAGTGGTCAAGCTGTTCAATGCTGTAAGTTTTCACTTACATTTTACTAAATTTTGGTTTCTTCCTAGAGTTTCTACCCATGTCTCTTTGCTTCTTTGTATCTCTATCATTATTGAACGGGAGATTTTGTTCACACCTGTTACAGGTCAATAAGGCACAAACTGCTCAGAGGGGGCTGGACCCCTCAAGGACTAAAGATGCAAAAGGTTAGTTTGTTTAATGCTGTATTTCCTAGAAAAACATTCAGAATAGTTTTTTTTTTATTATTGTTACTAGAGGGAAGAGATATATTTTAAGTAAAAATATAATTAAAGAAGAACAAAAAGTTGGGAGGTTAAATTTAAAAAATAAATGTGATTGGAAAGAAAGAAACTGACAATATAAGAGTAGTGGTAGTTGCTGTAGTTTAAAAGAGAATAGTGGAAGTTTAAGAAGGGTGCAAGGGTAAAATTGTTTTATGAAATGTGTACACCATAAGTGGGTATCCCCTTTATTATTAGTATAGATTATGAGGAGGAATCAAGTTACTCCAAGAGTACTTCTAAAAAATGTATGCCACATCCTCACTATTCATTTCTTGAAATCTAATGGTTTTAACGAGTAACTACACTTAACCTTTATTTTAAAGTTACTAGGGATGGGGAGTAATTCTTTTAAAGTTACTCTTGAAGTAACTTGATCCCCCCTTTATTATTATTATTATTGTAGTACTACAATTAGGGATGGAAATGAGCCAAGCCGCTTGTCAAGAGCCTATGGCTCGGCCTATTTAAGACTCGGCTCAGCTTGGCTTGTTTACTATAAAGGTCAAGCTCAAGTTTTTTAAAAAGTTTTTTTAGATAAAAAGGCCAAAGCCAAACTATAGAAA
Coding sequences of Glyma03g39840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g39840.1 sequence type=CDS gene model=Glyma03g39840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGAAGAAATGAAAATGGTAGAACCTGGAAGAGGTAAGAGGAAGTTTTTCAAAACGCAAGGCCATAAAAAGTCAAGTAAGAAAGCAAAAGTGATGCCACCACAACATGGACAAAAGAAAGTTAAAATAGACAAAAAAATGAAGAAACTTTTCCGCAAGCGAGCACGGGAGTATAATTCTGATGATGAAGAAGATGATGAGGCCACTGTCCCTGCTACCTTAGAGCCTAAAAGTCTGGCATCTATCACCAATAAAAGAAATGACAAGGATGGCATAGAAAGTGAGGATAGGTCTGAGGATGAAGGAGCTGCTGGACCACAAAAAACATGGAATAAGAATGCTACTGATATGAATTATCATAGCTCTGATGATGAAGGGGAAGATGATGATGAAATTCAGCCAGGAATTACAAAATTCACGGAAGGATGTAGAGCATTCAAGATGGCCTTTAGGAATCTTATGAAGAAGAGTGTTCCTGACGACATGTTGGGTCCAATATTGTCAGGGCAAAGGAAACTTGTTGTAGATAAACTTGCAGAAGAGGAAGCAGAACGCAAGGTCAAGGGAGAGGCCAAAAAGGAAAAGCAGATGTTGGCAGAAAAGGGGCATGTCAAACCTGCTACTTACTTGGATTCACATGAAAAGTTTTTAATAAGTGTTGCTACAAAAGGAGTGGTCAAGCTGTTCAATGCTGTCAATAAGGCACAAACTGCTCAGAGGGGGCTGGACCCCTCAAGGACTAAAGATGCAAAAGAGATACGAAAACGGACGAAACAAGCCTTCTTTTCAGAGTTAGGGAAACCATCATTGCCTGCAATTGGCACCACTACAAAGGCCAAGGAAAGCACTGATCGGGTAGAAGATGAACAACCTGCTTGGGCTCCATTACGAGATAACTATATGCTGACAAGTTCAAAACTAAAGGATTGGGACAAAATGCCTGATAAAAATGTATCAGATGACATGGGAAAAACTTCTGAAGATAGTAGTTCAGATGAAGATTAG
>Glyma03g39840.2 sequence type=CDS gene model=Glyma03g39840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGAAGAAATGAAAATGGTAGAACCTGGAAGAGGTAAGAGGAAGTTTTTCAAAACGCAAGGCCATAAAAAGTCAAGTAAGAAAGCAAAAGTGATGCCACCACAACATGGACAAAAGAAAGTTAAAATAGACAAAAAAATGAAGAAACTTTTCCGCAAGCGAGCACGGGAGTATAATTCTGATGATGAAGAAGATGATGAGGCCACTGTCCCTGCTACCTTAGAGCCTAAAAGTCTGGCATCTATCACCAATAAAAGAAATGACAAGGATGGCATAGAAAGTGAGGATAGGTCTGAGGATGAAGGAGCTGCTGGACCACAAAAAACATGGAATAAGAATGCTACTGATATGAATTATCATAGCTCTGATGATGAAGGGGAAGATGATGATGAAATTCAGCCAGGAATTACAAAATTCACGGAAGGATGTAGAGCATTCAAGATGGCCTTTAGGAATCTTATGAAGAAGAGTGTTCCTGACGACATGTTGGGTCCAATATTGTCAGGGCAAAGGAAACTTGTTGTAGATAAACTTGCAGAAGAGGAAGCAGAACGCAAGGTCAAGGGAGAGGCCAAAAAGGAAAAGCAGATGGTAGTTTTAAATTTCAAGTTGACTGATTTTAATGTTATTCAAAGTAGTATTGTCAATTTATTTGTATCCTCAGTTATTGTCACCCTTAAGTCTTGTATAGTAATCTTATTGCTTGTTACAGTTGGCAGAAAAGGGGCATGTCAAACCTGCTACTTACTTGGATTCACATGA
Predicted protein sequences of Glyma03g39840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g39840.1 sequence type=predicted peptide gene model=Glyma03g39840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEEMKMVEPGRGKRKFFKTQGHKKSSKKAKVMPPQHGQKKVKIDKKMKKLFRKRAREYNSDDEEDDEATVPATLEPKSLASITNKRNDKDGIESEDRSEDEGAAGPQKTWNKNATDMNYHSSDDEGEDDDEIQPGITKFTEGCRAFKMAFRNLMKKSVPDDMLGPILSGQRKLVVDKLAEEEAERKVKGEAKKEKQMLAEKGHVKPATYLDSHEKFLISVATKGVVKLFNAVNKAQTAQRGLDPSRTKDAKEIRKRTKQAFFSELGKPSLPAIGTTTKAKESTDRVEDEQPAWAPLRDNYMLTSSKLKDWDKMPDKNVSDDMGKTSEDSSSDED*
>Glyma03g39840.2 sequence type=predicted peptide gene model=Glyma03g39840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEEMKMVEPGRGKRKFFKTQGHKKSSKKAKVMPPQHGQKKVKIDKKMKKLFRKRAREYNSDDEEDDEATVPATLEPKSLASITNKRNDKDGIESEDRSEDEGAAGPQKTWNKNATDMNYHSSDDEGEDDDEIQPGITKFTEGCRAFKMAFRNLMKKSVPDDMLGPILSGQRKLVVDKLAEEEAERKVKGEAKKEKQMVVLNFKLTDFNVIQSSIVNLFVSSVIVTLKSCIVILLLVTVGRKGACQTCYLLGFT*