SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G54990 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr1:20511565-20513489 FORWARD LENGTH=473 | SoyBase | E_val: 1.00E-152 | ISS |
| GO:0009612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE RELATED | JGI | ISS | |
| PF12146 | PFAM | Putative lysophospholipase | JGI | ISS | |
| UniRef100_G7KYN0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein AUXIN RESPONSE n=1 Tax=Medicago truncatula RepID=G7KYN0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JRC3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRC3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g39740 not represented in the dataset |
Glyma03g39740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g42320 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g237400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g39740.2 sequence type=transcript gene model=Glyma03g39740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAAAAAATTATATAATTTTACAGAAATATTAATTTTACGGTGGAGGTGGGAGTGGGAGACGCAATGATGCTGTCCCCCGTAACGAGCACTGACAGGCTTTAGTCTTGTAGCCACAGCGAAGCTGGGAGCAGTGGGCGGTGAGCATGGCTATCATCACAGAAGAACCCGAACCAGAGCAACCAACACACTCACGCTCACAGATCTCACCCACCAAACCCAACAACAACCCCTTCTCCTTCTGGTTCTACTTCACCCTCTCCGTCTCCCTCTTCACTCTCTTCTTCGTCTTCACCTCCTCCACCCTCTCCCCCCAAGACTCCAAAACCTGGTTCCTCACCCTTCCCTCCCCCCTCCGCCACCACTACTCCAACGGCCGCACCATCAAGGTCCAAACACACCCCGACGAAACCCCCCTCCAAGTCTTCACCCTCCAAGAGGGTCCCACATCGTCCGAAAACATACTCATTGTCCACGGCCAAGGTCTCAGCTCTTACTCCTACCGCCACCTCGCCAAATCCCTCGCCGCCAATGGCCTCCACGTCACCTCCCTCGACCTCCCCGGACACGGCTTCTCCGACAACTCCGTCGAAGTCTCCGTCGAGGGCGGCGCCAACGGGGTTTTTGGGAGGTTTTGGTACGTCTACAGTGAGATTCAAGAGAGGGGTCTTTTCTGGGCGTTTGATCAGATGGTCGAAACAGGTCAAATTCCCTACGAGGAAATTCAAGCTCGCATGTCGAAGAGGAAAATAAGAAAGCCTATTGATTTGGGTCCGCAAGAGATGGGGAAAGTGTTGGGTGAAGTTATTGATTCCATGGGGCTTGCACCTGTTCATTTGATTCTTCACGATTCGGCATTGGGGTTGAGTGCTGATTTTGTTTCTGAGAGGGCTGAGTTGGTGAGAAGCGTGACGCTTATCGATACGGCGTCGTCTACTAAGGGGGCTTTTCCCGTTTGGGCTCTGGAGGTGCCTGTGGTGAGGGAGGTTGTGGTGGGGGTTTCTTTTGTGTTTGCTAAGGTGGTGGGGTTGTGCTGTTCCAAGAGGGTTGGTGTGGCGGATTCGGAGGGGTCGAGGGCGCTGTTGAAGGGCAGGGATGGGAGGAGGGCGGTTGTGAATGTTGGGAAGAGGGTGAATTCTAGCTTTGACTTGGCAGAGTGGGGTGAGGGGCTGAAAGGTGTGCCAATGCAGGTGGTGTGGTCTGCTGGGTGGTCCGAAGAATGGAGCCGGGAGGGTCACCGGGTTGCAAGTGCCCTTCCACAGGCCGGTTTTCTTACGCATTCTGGAGGCCGGTGGGCTCAGTTGTGTGATCTCAGGAGGACGCAGCCGTTGAGATAGCTGAAAAAATTTCTCAGTTTGTATTGTCATTACCAAAGTCTATTAGGAAAGTTGAACAGGAGTCCACCCCAGAGCACGTACAGAAGATGCTTGATGAAGCAAAAAGCAGTGGTCATGATCATCATCACCATCAAAGTCCTGATCATGGTCATGGACATGATCACTATGGTGATGCTCACATCCATGGAGCTAATTATATGGACGCATATGGGCTTGGTCATGGACATCATGGTTGGTGAAAGTGATCATGGGTTGGTCATGGATTTTACTGGCTAACATTCACGCTTGCAGATAGTATCTCTACTTCATATTTCTCATACATTGTATTAATCGGGAAGCTGAAGCTCGTACCATATGTAGTTCTTGCAAGCTAAAGCCTACATGTTGTATGTTATTTTTTTTTACTGTTATACATTTTCAAAATTGCCGAAGGGTGTGAGATCAGAGATGATACACTAAGTAACAACTATGCATTAGAAGATACTTGTAAGGAAAAAAAAAAAAACTTTACATTTTTTAGCTGATTGCTCTCGTGTGCTCTAGTTTGGAGCTCCTTTTTGTGTTTGGATGTTGGAATTATTTTTGTAAGGTGTTTGGTGAGAAGAATTTTTAACCTATGTACTTGAGATATTTTAGTAATTTAGATAGATGATTGTGCAATATTTGTTATATTAATTAAAATTCTCCTTGTTGAAAAACTAAAGATTTCAATCTAATAAACTCTTCCATATACTTTTTAAA
>Glyma03g39740.1 sequence type=CDS gene model=Glyma03g39740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTATCATCACAGAAGAACCCGAACCAGAGCAACCAACACACTCACGCTCACAGATCTCACCCACCAAACCCAACAACAACCCCTTCTCCTTCTGGTTCTACTTCACCCTCTCCGTCTCCCTCTTCACTCTCTTCTTCGTCTTCACCTCCTCCACCCTCTCCCCCCAAGACTCCAAAACCTGGTTCCTCACCCTTCCCTCCCCCCTCCGCCACCACTACTCCAACGGCCGCACCATCAAGGTCCAAACACACCCCGACGAAACCCCCCTCCAAGTCTTCACCCTCCAAGAGGGTCCCACATCGTCCGAAAACATACTCATTGTCCACGGCCAAGGTCTCAGCTCTTACTCCTACCGCCACCTCGCCAAATCCCTCGCCGCCAATGGCCTCCACGTCACCTCCCTCGACCTCCCCGGACACGGCTTCTCCGACAACTCCGTCGAAGTCTCCGTCGAGGGCGGCGCCAACGGGGTTTTTGGGAGGTTTTGGTACGTCTACAGTGAGATTCAAGAGAGGGGTCTTTTCTGGGCGTTTGATCAGATGGTCGAAACAGGTCAAATTCCCTACGAGGAAATTCAAGCTCGCATGTCGAAGAGGAAAATAAGAAAGCCTATTGATTTGGGTCCGCAAGAGATGGGGAAAGTGTTGGGTGAAGTTATTGATTCCATGGGGCTTGCACCTGTTCATTTGATTCTTCACGATTCGGCATTGGGGTTGAGTGCTGATTTTGTTTCTGAGAGGGCTGAGTTGGTGAGAAGCGTGACGCTTATCGATACGGCGTCGTCTACTAAGGGGGCTTTTCCCGTTTGGGCTCTGGAGGTGCCTGTGGTGAGGGAGGTTGTGGTGGGGGTTTCTTTTGTGTTTGCTAAGGTGGTGGGGTTGTGCTGTTCCAAGAGGGTTGGTGTGGCGGATTCGGAGGGGTCGAGGGCGCTGTTGAAGGGCAGGGATGGGAGGAGGGCGGTTGTGAATGTTGGGAAGAGGGTGAATTCTAGCTTTGACTTGGCAGAGTGGGGTGAGGGGCTGAAAGGTGTGCCAATGCAGGTGGTGTGGTCTGCTGGGTGGTCCGAAGAATGGAGCCGGGAGGGTCACCGGGTTGCAAGTGCCCTTCCACAGGCCGGTTTTCTTACGCATTCTGGAGGCCGGTGGGCTCAGGAGGACGCAGCCGTTGAGATAGCTGAAAAAATTTCTCAGTTTGTATTGTCATTACCAAAGTCTATTAGGAAAGTTGAACAGGAGTCCACCCCAGAGCACGTACAGAAGATGCTTGATGAAGCAAAAAGCAGTGGTCATGATCATCATCACCATCAAAGTCCTGATCATGGTCATGGACATGATCACTATGGTGATGCTCACATCCATGGAGCTAATTATATGGACGCATATGGGCTTGGTCATGGACATCATGGTTGGTGA >Glyma03g39740.2 sequence type=CDS gene model=Glyma03g39740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTATCATCACAGAAGAACCCGAACCAGAGCAACCAACACACTCACGCTCACAGATCTCACCCACCAAACCCAACAACAACCCCTTCTCCTTCTGGTTCTACTTCACCCTCTCCGTCTCCCTCTTCACTCTCTTCTTCGTCTTCACCTCCTCCACCCTCTCCCCCCAAGACTCCAAAACCTGGTTCCTCACCCTTCCCTCCCCCCTCCGCCACCACTACTCCAACGGCCGCACCATCAAGGTCCAAACACACCCCGACGAAACCCCCCTCCAAGTCTTCACCCTCCAAGAGGGTCCCACATCGTCCGAAAACATACTCATTGTCCACGGCCAAGGTCTCAGCTCTTACTCCTACCGCCACCTCGCCAAATCCCTCGCCGCCAATGGCCTCCACGTCACCTCCCTCGACCTCCCCGGACACGGCTTCTCCGACAACTCCGTCGAAGTCTCCGTCGAGGGCGGCGCCAACGGGGTTTTTGGGAGGTTTTGGTACGTCTACAGTGAGATTCAAGAGAGGGGTCTTTTCTGGGCGTTTGATCAGATGGTCGAAACAGGTCAAATTCCCTACGAGGAAATTCAAGCTCGCATGTCGAAGAGGAAAATAAGAAAGCCTATTGATTTGGGTCCGCAAGAGATGGGGAAAGTGTTGGGTGAAGTTATTGATTCCATGGGGCTTGCACCTGTTCATTTGATTCTTCACGATTCGGCATTGGGGTTGAGTGCTGATTTTGTTTCTGAGAGGGCTGAGTTGGTGAGAAGCGTGACGCTTATCGATACGGCGTCGTCTACTAAGGGGGCTTTTCCCGTTTGGGCTCTGGAGGTGCCTGTGGTGAGGGAGGTTGTGGTGGGGGTTTCTTTTGTGTTTGCTAAGGTGGTGGGGTTGTGCTGTTCCAAGAGGGTTGGTGTGGCGGATTCGGAGGGGTCGAGGGCGCTGTTGAAGGGCAGGGATGGGAGGAGGGCGGTTGTGAATGTTGGGAAGAGGGTGAATTCTAGCTTTGACTTGGCAGAGTGGGGTGAGGGGCTGAAAGGTGTGCCAATGCAGGTGGTGTGGTCTGCTGGGTGGTCCGAAGAATGGAGCCGGGAGGGTCACCGGGTTGCAAGTGCCCTTCCACAGGCCGGTTTTCTTACGCATTCTGGAGGCCGGTGGGCTCAGTTGTGTGATCTCAGGAGGACGCAGCCGTTGAGATAG
>Glyma03g39740.1 sequence type=predicted peptide gene model=Glyma03g39740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAIITEEPEPEQPTHSRSQISPTKPNNNPFSFWFYFTLSVSLFTLFFVFTSSTLSPQDSKTWFLTLPSPLRHHYSNGRTIKVQTHPDETPLQVFTLQEGPTSSENILIVHGQGLSSYSYRHLAKSLAANGLHVTSLDLPGHGFSDNSVEVSVEGGANGVFGRFWYVYSEIQERGLFWAFDQMVETGQIPYEEIQARMSKRKIRKPIDLGPQEMGKVLGEVIDSMGLAPVHLILHDSALGLSADFVSERAELVRSVTLIDTASSTKGAFPVWALEVPVVREVVVGVSFVFAKVVGLCCSKRVGVADSEGSRALLKGRDGRRAVVNVGKRVNSSFDLAEWGEGLKGVPMQVVWSAGWSEEWSREGHRVASALPQAGFLTHSGGRWAQEDAAVEIAEKISQFVLSLPKSIRKVEQESTPEHVQKMLDEAKSSGHDHHHHQSPDHGHGHDHYGDAHIHGANYMDAYGLGHGHHGW* >Glyma03g39740.2 sequence type=predicted peptide gene model=Glyma03g39740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAIITEEPEPEQPTHSRSQISPTKPNNNPFSFWFYFTLSVSLFTLFFVFTSSTLSPQDSKTWFLTLPSPLRHHYSNGRTIKVQTHPDETPLQVFTLQEGPTSSENILIVHGQGLSSYSYRHLAKSLAANGLHVTSLDLPGHGFSDNSVEVSVEGGANGVFGRFWYVYSEIQERGLFWAFDQMVETGQIPYEEIQARMSKRKIRKPIDLGPQEMGKVLGEVIDSMGLAPVHLILHDSALGLSADFVSERAELVRSVTLIDTASSTKGAFPVWALEVPVVREVVVGVSFVFAKVVGLCCSKRVGVADSEGSRALLKGRDGRRAVVNVGKRVNSSFDLAEWGEGLKGVPMQVVWSAGWSEEWSREGHRVASALPQAGFLTHSGGRWAQLCDLRRTQPLR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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