SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67500 | AT | Annotation by Michelle Graham. TAIR10: recovery protein 3 | chr1:25287707-25296714 REVERSE LENGTH=1890 | SoyBase | E_val: 0 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0006139 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009411 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV | SoyBase | N/A | ISS |
| GO:0010212 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0019985 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translesion synthesis | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016035 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: zeta DNA polymerase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity | SoyBase | N/A | ISS |
| KOG0968 | KOG | DNA polymerase zeta, catalytic subunit | JGI | ISS | |
| PTHR10322 | Panther | DNA POLYMERASE B FAMILY MEMBER | JGI | ISS | |
| PTHR10322:SF5 | Panther | DNA POLYMERASE ZETA CATALYTIC SUBUNIT | JGI | ISS | |
| PF00136 | PFAM | DNA polymerase family B | JGI | ISS | |
| PF03104 | PFAM | DNA polymerase family B, exonuclease domain | JGI | ISS | |
| UniRef100_I1JRC1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: DNA polymerase n=1 Tax=Glycine max RepID=I1JRC1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JRC1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase n=1 Tax=Glycine max RepID=I1JRC1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g39720 not represented in the dataset |
Glyma03g39720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g237200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g39720.1 sequence type=CDS gene model=Glyma03g39720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGATTCACAGTCCAATTCAGAGATTTTTAGCATTCGGATTGTCACCATCGACTATTACATGGCACCGCCCATCCCCGACGCTGATATCTGTTATAGCAGCTTCCACGGTGGAAAGGTGAATGAAGTGCCTGTGATAAGAGTGTATGGTCCTACTCCTGCTGGCCAGAAGACTTGCTTGCACATTCATCGAGCTTTACCCTATTTGTATGTGCCGTGTTCAGATATACCACTTCAACTGGACTCAGGTGATGCATTCACCTATAAGGTAGCTGCTTCTCTTGAGAAAGCCTTAAAGCTTAAAGGCAATGCTGGTTCAAGTAGACAACATGTACATGGATGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCATTCACTTGAGGAGTTATTTGTAAAGATATACCTATATTATCCTCAAGATGTCTCCCGTGCAGCTAATCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCTTATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTATCAAAGATGAAGTTCCGCTACCCCATTCCTGACACTTGCAAGAAATTAAATACCGATGATCAGCATAGAAAGGCAGATTCAGATGCTCATGCATGTTTAGAGTCAAAATTGTGGATGTCTTCCACGATCTCATCTGAGTGGATGTGGTCACCCCCAAGCAAATCCGGTGCTTTGTCAAATGATGAGGCTCACTGTCCTAAACGTCAAAGTATCTGTGAGCTTGAAGGAGATACTTCTGTGGATGAGATACTTAATCAGCAATTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAGCAACAGAAACGGAATGGGGTTCATGAGGCTACCATGCCTTCTGATCCTGGCAAACCACTACCAGAAGATGTTATGAAACTTCTCTCTGTTGGTCTTGACTTTGAGAAAAAATTTATTGAATTGTGCAGTGAAGCTGAAACCTCTTTATTTTGTACTTTTTCTGCGAAGGAATTGAGAGAAACAGACATAATAGGCTCGGCATCACCACCAGCTTCATTATGCAAAAATGCCAAATTGCATGAGGAAGGGACTGATGCAAATCTTGAAATGTTGACTATGGATGAAATCCCTTCATCTGAAATGATTGGAACATTGGACATAAAGGCTGCTGATAAGGAAGCACAAAATATTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGACGATGAACTTGTTTATGAAACAATCTTGACTCCCTTGTTACCTGCTGCAACAATTGATAAGGTGCTGGAGGAAGCTAATATTGCTTATGAGAATGAGTCCCAAAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAGTTGGAGTTACCAAATGAAAAACCCTCTCATTCCTTGGATCACTATTGTCCTATTGGAGCTTCATCAAGCAGTATGTTACCTCAAGTTGATGGTTCTAATGATGATGAGTTCTCAAGTCCACGTGATAGTTTGGCTGGAACCTCTTCTCTAGTAGAGATAAACAGTGAATACACAAGGGCTTCTGAGCACCATGTACTGCCCAATACTGACACAAGTACACTTATTAAAGATAAAAGGAATAAACAATGGGGGTCTTTGCCTTTTTCCTCAATTGATAAAGCTAATAATGATGGAGAGCATGCTACTTTACTTGTGACTCATCCATTTGAAAGTGAGACTGGAGATTCTGCTCACTCAAATTACTTAAACAGAAATGAGGTTAGAAATGGTGCTTGTTTTATAAGGAACAAGGGCAGAGATGCTTCAGATTCCAAAGAAGTACACAAATTGGTTAACTGCTCTTTGCGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACAAGCTGACTGTGAGTCTGGAACTACTAAAAAGCTTCTTTTAGACAGGCATGAGGAACAAAATGCATGCCTTTGGCAAAAACAGCTGGATTTAAAAACAATGCAAACTGATGAAGAAGAAATGGAACACCAGAAGAATTGTGAATGTGAAGTTAGCAATCATGCTAATTTAGTGCATGGGAAAATGCCCCTTCCAGCTGGCAGTGACTGTCTTTTACAAGCTACTAGCCGGCCAAAAGATGAATATTTTGGTCAACATGAAATAGAAGGTTTGGAAGCAAGTTCAGTGTTGAGGAACTGTACAAATGGAGAGTCTGCTTTAATGCATGGGGGACCAGGCCTCCAAAAGCCTGAAAAATTATACTTAATCAATTCCATAGACCCATCTATGGTTTGTAGGGGTGAAAACCTTAAGGTTGGCACAACTTTTACAAAACCTGTAGCTTCTGATGCCTGTACCCAAAATCCCCTCTTGGACACACGGTCGAGAACAGCTTCTGTTCATACAGTCAGAGCTTCTGAGAGGACTCCACAAACTGATACTTCTGCTTCAAGTAGTGTGCAGAGCTCCTTCATTGATGATAAAGTGTCTGACAAATTCATGGATCAAAGTTCTCATGGAAGCAGATCTTTTGTGCAACATGATCAGATGACGTTTTGTGAGAATTCTGTGGAGAAAAATGCTGCAAGTGATGTGCAAGTATTGTTAAGTGAAAAAGTGGATACTCAAAAGCTGGGTGAAAATTTGTTGCATGAGACTATTAAATTAACTGAAATAACCACAGGCAAGAACCCCCTGGCTGATAAGACTCTTGAAGGTACTTTGACCTTGCCAACAACCTCTAATACCCATTTTCATTTGGATGAGGACAGCTCTGATGAAATGCCAGGGGATGTTCTGGATGACTTTCTTCCGATATCTGCAAGGGATTCTCAGAAAGGGATGGAGACTTGCAATGAGTATGTTACAGTTAAAACCCTTACATCTAATGGTACAAAGAGTGTCTCGACCCACTATCAAAATGATGGTTCTCACCTATACCTATTAACTCCTAATATTTTGCCTCCTTCTGTGGGTACTGTGCATAGATGGTTACTTTGTAACAAGAGAGGGAACATTCCTGATCATACACATCAAGAAACAGATGCAGAGGACAAGGATGTTCCAAAATGTGCTTCTGAGACTGAACCTCCTCTTAGGCCTAAGCTGTATCAAGATTCTGATACAGAAAATAAGCCTCCATGCAATGGAGAAGGACAAACAGAAAGAGTGAAAGCATGCCTAGATGACTCACAAGATATTTCTCAGATATCAGACCCTGATAGAAAATCAAGTTTTACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAATTGACATTACTTAGTATAGAGATTCTTGCAGAATGTAGAGGAGACCTTTTACCCGATCCTCAATTTGATGCCATCAACATTGTAGCTCTTGGTTTTCAGAATGACGGTGATTCTATTGTTGAAGTTCTAGTTCTTTTACATAGTAAATATGTACCTTGTCAGAGAAGTTTTGATGGTCTATTTGGCTGTAAAATATTGGTCTTCACTGATGAGAAACTCTTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTGGCAGAAAGGGCATCACATCTTGGTTTGGGATTACTTAATAATGTGTCTCGCACTCCATCTGAGTCTTTGATTGCTTCTGAAGATAGCAAAACTTATGAAAAAGATATCTTGGAACTGGACATCCATGATACCCCTAGTCGAGATTGTTGCGTGCCAGAAAATTCAATAATTGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATATAGGAGGCAGAATTGTCCTGAATGCATGGCGATTGATCCGTGGAGAAGTTAAGCTGAACTTATATTCAGTTGAAGCTGTAGCTGAATCTGTATTGAGGCGGAAAATTCCTTCATTTCATCACAAGGTGCTAACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTTATAGAGAGAGCAAAGCTGAACCTTGAGATAATAAACCAGCTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTTTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACGCAAAACTATCTTGCCATCTCACCTGGAAAACAACAGGTTGCTTCTCAGCCTGCCATGGAGTGCCTTCCCCTAGTAATGGAACCAGAATCTGGATTTTATTCAGATCCTGTTGTTGTACTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTTTGCACTTGTCTCGGTAAAGTTGTGGCATCAAAGGCCAACACACTTGGGGTTAGTTCATTCTCACCAGAGCAACATGTTCTGCAGGATTTAAAGGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCGAAGGTTCGAAGAGGTATACTGCCCCGCTTATTGGAAGAAATCTTAACAACAAGAATTATGGTAAAACAAGCAATAAAAAAGTTGGCTCCTCCAGAGAAAGTTCTTCAGCGGATATTTAATGCAAGGCAGCTTGCTTTGAAGCTCATAGCGAATGTAACATATGGCTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATCGTTCAGTGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAGAGGATGCACTGTCAAAGAGTCTTTCCAAATTGGGAGTGAGATTGCCTCTGCTATCACTGCTATGAATCCTAGCCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTCCTTACTAAGAAAAGATATGTCGGCTACAGTTATGAAAGCCCTGATCAAATTGAACCTGTTTTTGATGCCAAGGGTATTGAGACAGTACGCAGGGACACATGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGACTCTTCTTTGAGCATCAGAATTTATTGGAGGTGAAGACTTATTTGCATCGTCAGTGGAAGAGGATTCTTTCAGGAAGAATCTGCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGAATCTCATCACTTCCTCCTGCTGCAATTGTAGCCACTAAGGCAATGACGGTTGACCCTAGGGCAGAACCACGTTATGCTGAGAGAATACCGTATGTTGTAATTCATGGAGAGCCTGGAGCTCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATTTAGAATAAATGATTTATATTACATTAATAAACAAATAATACCAGCTTTACAGCGGGTATTTGGACTTGTTGGTGCTGACTTAAACCATTGGTTTTCAGAGATGCCCCGCCCCACAAGGGAAGCTTCTGCAAAGCATACATTAACTACAAATTTCCATCAAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGTGATAGGTTGGTTCAGGCATCAGCCCGTTTATGCAATCAATGTTCTGAAAATGAAGTAGCTGCTGCAACAGCAGTGATTAGTAAGACTTCAAAGTTAGAGCAAGAGATGCAACATCTTGTTGCTGTATGTCACCATTGTGGAGGCGGGGATAGGCTTCTGGAAAATGGTGTGAAGTGTACGTCCATTTCATGCTTGGTGTTTTATGAGAGGCGGAAGGTTCAGAAAGAACTGCTAGCTGCCACCCATGTTGCTGCAGATAAAGACTTATATCCGAGATGCACAGTGGAATGGTTCTGA
>Glyma03g39720.1 sequence type=predicted peptide gene model=Glyma03g39720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDSQSNSEIFSIRIVTIDYYMAPPIPDADICYSSFHGGKVNEVPVIRVYGPTPAGQKTCLHIHRALPYLYVPCSDIPLQLDSGDAFTYKVAASLEKALKLKGNAGSSRQHVHGCSLVRARKFYGYHSLEELFVKIYLYYPQDVSRAANLLLAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGHLHLSKMKFRYPIPDTCKKLNTDDQHRKADSDAHACLESKLWMSSTISSEWMWSPPSKSGALSNDEAHCPKRQSICELEGDTSVDEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRNGVHEATMPSDPGKPLPEDVMKLLSVGLDFEKKFIELCSEAETSLFCTFSAKELRETDIIGSASPPASLCKNAKLHEEGTDANLEMLTMDEIPSSEMIGTLDIKAADKEAQNILKWLATSQAAEDINSDDELVYETILTPLLPAATIDKVLEEANIAYENESQKECQDILDSIDDMLELELPNEKPSHSLDHYCPIGASSSSMLPQVDGSNDDEFSSPRDSLAGTSSLVEINSEYTRASEHHVLPNTDTSTLIKDKRNKQWGSLPFSSIDKANNDGEHATLLVTHPFESETGDSAHSNYLNRNEVRNGACFIRNKGRDASDSKEVHKLVNCSLRDLMRRKRSYRVEQADCESGTTKKLLLDRHEEQNACLWQKQLDLKTMQTDEEEMEHQKNCECEVSNHANLVHGKMPLPAGSDCLLQATSRPKDEYFGQHEIEGLEASSVLRNCTNGESALMHGGPGLQKPEKLYLINSIDPSMVCRGENLKVGTTFTKPVASDACTQNPLLDTRSRTASVHTVRASERTPQTDTSASSSVQSSFIDDKVSDKFMDQSSHGSRSFVQHDQMTFCENSVEKNAASDVQVLLSEKVDTQKLGENLLHETIKLTEITTGKNPLADKTLEGTLTLPTTSNTHFHLDEDSSDEMPGDVLDDFLPISARDSQKGMETCNEYVTVKTLTSNGTKSVSTHYQNDGSHLYLLTPNILPPSVGTVHRWLLCNKRGNIPDHTHQETDAEDKDVPKCASETEPPLRPKLYQDSDTENKPPCNGEGQTERVKACLDDSQDISQISDPDRKSSFTPLSQIGFRDPASVGCGQQLTLLSIEILAECRGDLLPDPQFDAINIVALGFQNDGDSIVEVLVLLHSKYVPCQRSFDGLFGCKILVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNVSRTPSESLIASEDSKTYEKDILELDIHDTPSRDCCVPENSIIEDEWGRTHASGVHIGGRIVLNAWRLIRGEVKLNLYSVEAVAESVLRRKIPSFHHKVLTKWFSSGPGRARYRCIKYVIERAKLNLEIINQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGKQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQDLKDQILLTPNGVMFVPSKVRRGILPRLLEEILTTRIMVKQAIKKLAPPEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLRGCTVKESFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQNLLEVKTYLHRQWKRILSGRICLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMTVDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNHWFSEMPRPTREASAKHTLTTNFHQTRIDYYYLSKHCVLCDRLVQASARLCNQCSENEVAAATAVISKTSKLEQEMQHLVAVCHHCGGGDRLLENGVKCTSISCLVFYERRKVQKELLAATHVAADKDLYPRCTVEWF*
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