Glyma03g39710 - SoyBase

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Report for Sequence Feature Glyma03g39710

Feature Type:	gene_model
Chromosome:	Gm03
Start:	45706365
stop:	45710948
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g39710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55040	AT	Annotation by Michelle Graham. TAIR10: zinc finger (Ran-binding) family protein \| chr1:20534895-20538901 FORWARD LENGTH=849	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23111	Panther	ZINC FINGER PROTEIN	JGI		ISS
PTHR23111:SF19	Panther	ZINC FINGER (RAN-BINDING) FAMILY PROTEIN	JGI		ISS
PF00641	PFAM	Zn-finger in Ran binding protein and others	JGI		ISS
UniRef100_G7KYM5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase n=1 Tax=Medicago truncatula RepID=G7KYM5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JRC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JRC0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g39710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g39710

Paralog	Evidence	Comments
Glyma19g42310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g39710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g237100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g39710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g39710

Limit To All Plant Sequences

>Glyma03g39710.2   sequence type=transcript   gene model=Glyma03g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTGAGACTGAGAGTTGAGGTTTGGCGGTGGCGCAATGCATGTACTATGTACTATGTAGGGTTTAAGCTTTTGTTCAAGAGTGTGTCTGCGTGTTGGCGCAATGCATGTTGATGTAGTAGGGTTTAAGTTCTCTGCTTCTGCTAGATTGTGTTGACGTGACGGAGGTTTAAACTACTCTAAAGTTTGCATTTGCAGAATCCTTCACTGTTGAGCTCTAAGCAAGTAAAAATGGGTTATGGTTACGGTCCTTTCTCTCTCCTATTAAACAGACGCCTCCATCTCTCTTCTTCCCTAAACCCTAAACCCTCTTTCCCACTCCTTCACCTTCTCACCAAGCCCTTCTCCACCGCCCCACCAGACCCTAACCCTAACCCCAAACCCTCTTCCCTCTCCGCCCGTCTCAGCTTCGTCTTCGACCAAATTGATGCCATCGAAAAACAGCGCTCTCAGAAGCATGAAACGCTTCAGCGCATTCGGGCCTGGCGTGAATCCAAAAACGCCCCCCCGGAGCCGGCACTGTCCGTCTCCGCAGACGACGAAAGCCCTCCGGAGCCGCCACCCAAGAAGGCGGTGGAGTTGGTGCATCCGTGGCCGGAGTGGATCCAATTGATGGAGATGCTCGTACACCAGAATTACTTCGATCACAAAAGGAGGGACGAGGATAAAATGGTCCACGACTTAGGATTCAATGCACCCGAGGTTGCTGAAGGATTCGATTTCACTAAGGATTTTAAGAGCGTTCACATGGCGTGTCTCAGTTTCGGGAGAGACCGTTTTGATATATTGAGGTCCTTGTCAAGGAAGGATATTCAAGTTTTGGTTGGTTATGGATGCCCCACTGTGGACAGAAAAGTGGTTTTCTCTGCAAAACTTTTAAGGAAGCATGTTCACCTTGACGAAGGAGATCTTGAGAAGCAATTGTGAAAGGGGGTATTTGCTAACAAACAAAGAGGATGAGGCACGGACTCTTGATGTCATGAGGCTCCTGCTGACTTTTGGTTTTGATCCTGTTGATGGATCAGTGATCAATAAGTCACTTCTAAAGCAGAAGTCTGTGAAAACAGTGGTTCGTAAATTGCTTCATGAGGTTGTCAAGCTGAGTTCAGTTCCCATTGATCCAAATCTTCCTCCTCCGGTGATTAAAAAACCACCACCAAAAGTGAAACAACCTCCTCCTCCTCCAAAGAGACGTGTTGGGCGGGATGACGTTGAGATGAAAAGAGGGGACTGGCTGTGTCCTAAGTGTGAATTCATGAATTTTGCAAAGAATACTGTTTGCTTACAGTGTGATGCCAAGCGTCCTAAGAGACAGTTGCTGCCAGGAGAATGGGAGTGCCCCAAGTGCAATTTCTTGAATTACAGAAGGAATATGGTATGCTTCCATTGTGAGTGTAAACGGCCACCTGATGAGTTTCTGGAGAATAAAATGCAAGATAGAATACAGAATTCCAAACCTAAGTTGGATAAGAAGGGCAGCCGACAAGAGGTTTCCAATGCCTGGAATTTTGACTTTGATGACAATGAATCAGATGGTGCAGATGTAGCTGCTTTTGAGTATGCAGATACTCATGCTATAGATGAGAATTCAGATAATCATGCTCAACGTGGAAATGATAGGGGGTGGGAAGATGATTTTGAGAAGAACAACAGAGTGCAAGGGTCCCCTGATGGAGAATATGCTAATCCTGGTCTTTATAGATCTAGAACAGGGTTTGATGATTTTGAGGATGAAGATGATATAGATAGTTATGAGCTAGAAACTGCTCAAAATAGTAGTAAAAGAGTGGAAGAATCTAAATATAATTTCTCAGAAGGTGAAAACTTTTCTGAATCGGAAGATATTGAAGGCACTGATGATAAGATGCATGCACGACACAAAACAGCTTCTGGAAGAAGTGTTCAGTCCCGATCAATTCGCAAGAATACGTCTTTCTCTGGGTCCAAGGATGATGAACTTGATTTTGGTACCGATGAACAACTGTCTGTGGTCTCCAATTTCAAATATGGGCACGTTTCTGCTTCTGACAGAAAAAGAAAAGGCAGAGGTCCTTCCAAGAAATTAAGCTTTGGTTCTGAATCTGAGGAAGACATGGGTGGTGGCTTATACTCTGATGAGGATGGTGACTTAAATGAAGAATATTCATTTAGGAAAAATAAAGGGAACAAAGGTGATCCTTGCAGACAAAATAAGGGGAATAGACACGATTCTGGAAGAAGGAACTTTACCAAAGACAGGAAGTCAGGATCTATTGGTGGTCGCCGAGCAAATATGCTCAGTGATGATTTTGATGGATCATCCCAGCAGTCTTATAGGAACAGTAGGGGGTCTCAGGGAAATGACCGTAATCGGAAGAGTTTTGAAGATTTTGATGGACCGTCTCGGCAATCATATGGTGATGGCAGAGGGTCCCGAGGAAACAACCGTAATGGATCATCCCGGCAGTCTTATGGGAATGGTAGGGGGTCTCGAGGAAATGACCGCTATAGGCAGAGATTTGAAGATTTTGATGGACCATCTCAACGATCATATAGTGATGGTAGAGGGTCCCGTGGAAGCAACCGCAATGGATCATCCCGGCAGTCTTATGGGAATGATAGAGGATCTCAAGGAAATGACCGTAGATGGCAGAGATCTGAAGACAGGGAGAATAGCACAGGACGGTTAAATAAATATAGAATGGATGAGAAAGATTCTGGTGGTGAATTTAAAAACAGTAGGCGTGTAATTGAAAGATAGCGCCAAGGCTCCATGAACAAATTTGTGTTGCTCTGTACGCTGTTGCACATAAATACTGCTGATTGCCAAACTCAAATGTGATACAATACAAGTCTAAAGGTCAGTCGGTATTCATAAGATCATTTGATACTAAAATTTCCTTGAAATGACTGGAAAGCTTAAACCTTGGAAAAATTTCCCCTTCCGATGTACCTGTAGCTAGTCATTTAAAAAATAACAGTTCTTGTGAATTGGTTACAAATGTTCAGTTGGACGATCAAGTTATGTCTTGACGTTATTTTTCGGCAAAGTTAACCTGCCATATGAGCGGTCGTGCCCCGCCATAATTTGATCATCCAATATAAGGTTCGTTAATAACTGCCATATCTGTCGCTCAAATATTTGTCCCGTCGATTGCAGTGTCTTCTTTCTTAGTGACTTCTCTGAAGCAATACTGTTGCAAAGCTATGCATTTTTAGTAATCACACATAATTCTGTGGGATTATGAATATGAAAATTGTTAAGGCAATATCTTAAGAGCTTAATAGGTTGCACTTTTGTTATTGCAG

Coding sequences of Glyma03g39710

Limit To All Plant Sequences

>Glyma03g39710.1   sequence type=CDS   gene model=Glyma03g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTATGGTTACGGTCCTTTCTCTCTCCTATTAAACAGACGCCTCCATCTCTCTTCTTCCCTAAACCCTAAACCCTCTTTCCCACTCCTTCACCTTCTCACCAAGCCCTTCTCCACCGCCCCACCAGACCCTAACCCTAACCCCAAACCCTCTTCCCTCTCCGCCCGTCTCAGCTTCGTCTTCGACCAAATTGATGCCATCGAAAAACAGCGCTCTCAGAAGCATGAAACGCTTCAGCGCATTCGGGCCTGGCGTGAATCCAAAAACGCCCCCCCGGAGCCGGCACTGTCCGTCTCCGCAGACGACGAAAGCCCTCCGGAGCCGCCACCCAAGAAGGCGGTGGAGTTGGTGCATCCGTGGCCGGAGTGGATCCAATTGATGGAGATGCTCGTACACCAGAATTACTTCGATCACAAAAGGAGGGACGAGGATAAAATGGTCCACGACTTAGGATTCAATGCACCCGAGGTTGCTGAAGGATTCGATTTCACTAAGGATTTTAAGAGCGTTCACATGGCGTGTCTCAGTTTCGGGAGAGACCGTTTTGATATATTGAGGTCCTTGTCAAGGAAGGATATTCAAGTTTTGGTTGGTTATGGATGCCCCACTGTGGACAGAAAAGTGGTTTTCTCTGCAAAACTTTTAAGGAAGCATGTTCACCTTGACGAAGGAGATGTCTGTAGTTCCTGCAGCTTGAGAAGCAATTGTGAAAGGGGGTATTTGCTAACAAACAAAGAGGATGAGGCACGGACTCTTGATGTCATGAGGCTCCTGCTGACTTTTGGTTTTGATCCTGTTGATGGATCAGTGATCAATAAGTCACTTCTAAAGCAGAAGTCTGTGAAAACAGTGGTTCGTAAATTGCTTCATGAGGTTGTCAAGCTGAGTTCAGTTCCCATTGATCCAAATCTTCCTCCTCCGGTGATTAAAAAACCACCACCAAAAGTGAAACAACCTCCTCCTCCTCCAAAGAGACGTGTTGGGCGGGATGACGTTGAGATGAAAAGAGGGGACTGGCTGTGTCCTAAGTGTGAATTCATGAATTTTGCAAAGAATACTGTTTGCTTACAGTGTGATGCCAAGCGTCCTAAGAGACAGTTGCTGCCAGGAGAATGGGAGTGCCCCAAGTGCAATTTCTTGAATTACAGAAGGAATATGGTATGCTTCCATTGTGAGTGTAAACGGCCACCTGATGAGTTTCTGGAGAATAAAATGCAAGATAGAATACAGAATTCCAAACCTAAGTTGGATAAGAAGGGCAGCCGACAAGAGGTTTCCAATGCCTGGAATTTTGACTTTGATGACAATGAATCAGATGGTGCAGATGTAGCTGCTTTTGAGTATGCAGATACTCATGCTATAGATGAGAATTCAGATAATCATGCTCAACGTGGAAATGATAGGGGGTGGGAAGATGATTTTGAGAAGAACAACAGAGTGCAAGGGTCCCCTGATGGAGAATATGCTAATCCTGGTCTTTATAGATCTAGAACAGGGTTTGATGATTTTGAGGATGAAGATGATATAGATAGTTATGAGCTAGAAACTGCTCAAAATAGTAGTAAAAGAGTGGAAGAATCTAAATATAATTTCTCAGAAGGTGAAAACTTTTCTGAATCGGAAGATATTGAAGGCACTGATGATAAGATGCATGCACGACACAAAACAGCTTCTGGAAGAAGTGTTCAGTCCCGATCAATTCGCAAGAATACGTCTTTCTCTGGGTCCAAGGATGATGAACTTGATTTTGGTACCGATGAACAACTGTCTGTGGTCTCCAATTTCAAATATGGGCACGTTTCTGCTTCTGACAGAAAAAGAAAAGGCAGAGGTCCTTCCAAGAAATTAAGCTTTGGTTCTGAATCTGAGGAAGACATGGGTGGTGGCTTATACTCTGATGAGGATGGTGACTTAAATGAAGAATATTCATTTAGGAAAAATAAAGGGAACAAAGGTGATCCTTGCAGACAAAATAAGGGGAATAGACACGATTCTGGAAGAAGGAACTTTACCAAAGACAGGAAGTCAGGATCTATTGGTGGTCGCCGAGCAAATATGCTCAGTGATGATTTTGATGGATCATCCCAGCAGTCTTATAGGAACAGTAGGGGGTCTCAGGGAAATGACCGTAATCGGAAGAGTTTTGAAGATTTTGATGGACCGTCTCGGCAATCATATGGTGATGGCAGAGGGTCCCGAGGAAACAACCGTAATGGATCATCCCGGCAGTCTTATGGGAATGGTAGGGGGTCTCGAGGAAATGACCGCTATAGGCAGAGATTTGAAGATTTTGATGGACCATCTCAACGATCATATAGTGATGGTAGAGGGTCCCGTGGAAGCAACCGCAATGGATCATCCCGGCAGTCTTATGGGAATGATAGAGGATCTCAAGGAAATGACCGTAGATGGCAGAGATCTGAAGACAGGGAGAATAGCACAGGACGGTTAAATAAATATAGAATGGATGAGAAAGATTCTGGTGGTGAATTTAAAAACAGTAGGCGTGTAATTGAAAGATAG

>Glyma03g39710.2   sequence type=CDS   gene model=Glyma03g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCACCTTGACGAAGGAGATCTTGAGAAGCAATTGTGAAAGGGGGTATTTGCTAACAAACAAAGAGGATGAGGCACGGACTCTTGATGTCATGAGGCTCCTGCTGACTTTTGGTTTTGATCCTGTTGATGGATCAGTGATCAATAAGTCACTTCTAAAGCAGAAGTCTGTGAAAACAGTGGTTCGTAAATTGCTTCATGAGGTTGTCAAGCTGAGTTCAGTTCCCATTGATCCAAATCTTCCTCCTCCGGTGATTAAAAAACCACCACCAAAAGTGAAACAACCTCCTCCTCCTCCAAAGAGACGTGTTGGGCGGGATGACGTTGAGATGAAAAGAGGGGACTGGCTGTGTCCTAAGTGTGAATTCATGAATTTTGCAAAGAATACTGTTTGCTTACAGTGTGATGCCAAGCGTCCTAAGAGACAGTTGCTGCCAGGAGAATGGGAGTGCCCCAAGTGCAATTTCTTGAATTACAGAAGGAATATGGTATGCTTCCATTGTGAGTGTAAACGGCCACCTGATGAGTTTCTGGAGAATAAAATGCAAGATAGAATACAGAATTCCAAACCTAAGTTGGATAAGAAGGGCAGCCGACAAGAGGTTTCCAATGCCTGGAATTTTGACTTTGATGACAATGAATCAGATGGTGCAGATGTAGCTGCTTTTGAGTATGCAGATACTCATGCTATAGATGAGAATTCAGATAATCATGCTCAACGTGGAAATGATAGGGGGTGGGAAGATGATTTTGAGAAGAACAACAGAGTGCAAGGGTCCCCTGATGGAGAATATGCTAATCCTGGTCTTTATAGATCTAGAACAGGGTTTGATGATTTTGAGGATGAAGATGATATAGATAGTTATGAGCTAGAAACTGCTCAAAATAGTAGTAAAAGAGTGGAAGAATCTAAATATAATTTCTCAGAAGGTGAAAACTTTTCTGAATCGGAAGATATTGAAGGCACTGATGATAAGATGCATGCACGACACAAAACAGCTTCTGGAAGAAGTGTTCAGTCCCGATCAATTCGCAAGAATACGTCTTTCTCTGGGTCCAAGGATGATGAACTTGATTTTGGTACCGATGAACAACTGTCTGTGGTCTCCAATTTCAAATATGGGCACGTTTCTGCTTCTGACAGAAAAAGAAAAGGCAGAGGTCCTTCCAAGAAATTAAGCTTTGGTTCTGAATCTGAGGAAGACATGGGTGGTGGCTTATACTCTGATGAGGATGGTGACTTAAATGAAGAATATTCATTTAGGAAAAATAAAGGGAACAAAGGTGATCCTTGCAGACAAAATAAGGGGAATAGACACGATTCTGGAAGAAGGAACTTTACCAAAGACAGGAAGTCAGGATCTATTGGTGGTCGCCGAGCAAATATGCTCAGTGATGATTTTGATGGATCATCCCAGCAGTCTTATAGGAACAGTAGGGGGTCTCAGGGAAATGACCGTAATCGGAAGAGTTTTGAAGATTTTGATGGACCGTCTCGGCAATCATATGGTGATGGCAGAGGGTCCCGAGGAAACAACCGTAATGGATCATCCCGGCAGTCTTATGGGAATGGTAGGGGGTCTCGAGGAAATGACCGCTATAGGCAGAGATTTGAAGATTTTGATGGACCATCTCAACGATCATATAGTGATGGTAGAGGGTCCCGTGGAAGCAACCGCAATGGATCATCCCGGCAGTCTTATGGGAATGATAGAGGATCTCAAGGAAATGACCGTAGATGGCAGAGATCTGAAGACAGGGAGAATAGCACAGGACGGTTAAATAAATATAGAATGGATGAGAAAGATTCTGGTGGTGAATTTAAAAACAGTAGGCGTGTAATTGAAAGATAG

Predicted protein sequences of Glyma03g39710

Limit To All Plant Sequences

>Glyma03g39710.1   sequence type=predicted peptide   gene model=Glyma03g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGYGYGPFSLLLNRRLHLSSSLNPKPSFPLLHLLTKPFSTAPPDPNPNPKPSSLSARLSFVFDQIDAIEKQRSQKHETLQRIRAWRESKNAPPEPALSVSADDESPPEPPPKKAVELVHPWPEWIQLMEMLVHQNYFDHKRRDEDKMVHDLGFNAPEVAEGFDFTKDFKSVHMACLSFGRDRFDILRSLSRKDIQVLVGYGCPTVDRKVVFSAKLLRKHVHLDEGDVCSSCSLRSNCERGYLLTNKEDEARTLDVMRLLLTFGFDPVDGSVINKSLLKQKSVKTVVRKLLHEVVKLSSVPIDPNLPPPVIKKPPPKVKQPPPPPKRRVGRDDVEMKRGDWLCPKCEFMNFAKNTVCLQCDAKRPKRQLLPGEWECPKCNFLNYRRNMVCFHCECKRPPDEFLENKMQDRIQNSKPKLDKKGSRQEVSNAWNFDFDDNESDGADVAAFEYADTHAIDENSDNHAQRGNDRGWEDDFEKNNRVQGSPDGEYANPGLYRSRTGFDDFEDEDDIDSYELETAQNSSKRVEESKYNFSEGENFSESEDIEGTDDKMHARHKTASGRSVQSRSIRKNTSFSGSKDDELDFGTDEQLSVVSNFKYGHVSASDRKRKGRGPSKKLSFGSESEEDMGGGLYSDEDGDLNEEYSFRKNKGNKGDPCRQNKGNRHDSGRRNFTKDRKSGSIGGRRANMLSDDFDGSSQQSYRNSRGSQGNDRNRKSFEDFDGPSRQSYGDGRGSRGNNRNGSSRQSYGNGRGSRGNDRYRQRFEDFDGPSQRSYSDGRGSRGSNRNGSSRQSYGNDRGSQGNDRRWQRSEDRENSTGRLNKYRMDEKDSGGEFKNSRRVIER*

>Glyma03g39710.2   sequence type=predicted peptide   gene model=Glyma03g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFTLTKEILRSNCERGYLLTNKEDEARTLDVMRLLLTFGFDPVDGSVINKSLLKQKSVKTVVRKLLHEVVKLSSVPIDPNLPPPVIKKPPPKVKQPPPPPKRRVGRDDVEMKRGDWLCPKCEFMNFAKNTVCLQCDAKRPKRQLLPGEWECPKCNFLNYRRNMVCFHCECKRPPDEFLENKMQDRIQNSKPKLDKKGSRQEVSNAWNFDFDDNESDGADVAAFEYADTHAIDENSDNHAQRGNDRGWEDDFEKNNRVQGSPDGEYANPGLYRSRTGFDDFEDEDDIDSYELETAQNSSKRVEESKYNFSEGENFSESEDIEGTDDKMHARHKTASGRSVQSRSIRKNTSFSGSKDDELDFGTDEQLSVVSNFKYGHVSASDRKRKGRGPSKKLSFGSESEEDMGGGLYSDEDGDLNEEYSFRKNKGNKGDPCRQNKGNRHDSGRRNFTKDRKSGSIGGRRANMLSDDFDGSSQQSYRNSRGSQGNDRNRKSFEDFDGPSRQSYGDGRGSRGNNRNGSSRQSYGNGRGSRGNDRYRQRFEDFDGPSQRSYSDGRGSRGSNRNGSSRQSYGNDRGSQGNDRRWQRSEDRENSTGRLNKYRMDEKDSGGEFKNSRRVIER*

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