Glyma03g39620 - SoyBase

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Report for Sequence Feature Glyma03g39620

Feature Type:	gene_model
Chromosome:	Gm03
Start:	45634279
stop:	45637743
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g39620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05470	AT	Annotation by Michelle Graham. TAIR10: Actin-binding FH2 (formin homology 2) family protein \| chr3:1579667-1582547 REVERSE LENGTH=884	SoyBase	E_val: 0	ISS
GO:0016043	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular component organization	SoyBase	N/A	ISS
GO:0030036	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin binding	SoyBase	N/A	ISS
KOG1922	KOG	Rho GTPase effector BNI1 and related formins	JGI		ISS
PTHR23213	Panther	FORMIN-RELATED	JGI		ISS
PTHR23213:SF18	Panther	FORMIN-RELATED	JGI		ISS
PF02181	PFAM	Formin Homology 2 Domain	JGI		ISS
UniRef100_G7I8P1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Formin-like protein n=1 Tax=Medicago truncatula RepID=G7I8P1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JRB2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JRB2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g39620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g39620

Paralog	Evidence	Comments
Glyma19g42230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g39620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g236400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g39620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g39620

Limit To All Plant Sequences

>Glyma03g39620.1   sequence type=CDS   gene model=Glyma03g39620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTTGATTCTCAGGCTCACAGCATGGTTTTTATCATTACCATATTGATATTCTTGTCATTGCAAAATGCAGCAGGAAATGAAAATCAGATTGAGACAATCTCAGGAATGGATGAGAATGAAAACAAGCAAACTCCTATAGTGGAAAACTTTAGAACTTTGCTTGGACTCAACATGTTCAACACAAGAAAGCCATGCTATAATGTTGCTGACTCTAACTTTGTGTCCCTCTCACCTTCTCTGTCACCCAACACCGAAGCTGAGGCTCTGGCTCCGGCTCCGGCTTCGGAGCTGCACGTGCACCCTCATTCCTATCACTCACATAGGAACTTGCCACTTCACAAGATTCTAAAAGAAGATAAAGGCATGGCAAAAAGAACAACAATAGTAGCTGTTGTAGTACCTGGTGGAGTTGCTACCTTAATTTGTGCACTTGGGTGTGTCTGTGTTTGCAAGAAATTCAGAAATCACAAAAGGAAACCCAATAGGACAATGCCACTCTTCAGCAAGAACGAAAGAACAGGATGTACGTCTACGTACCAAAATTCATCAAGCAATGTGAGTTTAAACTCTGCCCCTGATCTGTTTTACCTCACTTGTTTGAAACAAACTTGTGACACACAAAATAGAAGTACTTCAACCCATGATTCCCCCAAACGTACAATTTATGAGAAGAAAGTGTTGCGTAAAGAAGAATATGACAAGGCTAGCACTAGTAGCTCTTCCACAAAGGAAATTCTCTCTGTTCATGAGGATTTGGAATATCAATGTGGCAAAGCTTCATCTGGAGAAAAAACTGTCCTTCGAGGATGCCATAGCCTTCCATCAGACAACGAAAGTTTTCATTCATGTTTTGATACTCACTCATCAGTAAGTGAAACAGAAACATTGTGTCTCTCTCCTAGAAATTCAATCTCTTCAACAAATCAATTTCCTTGCCCCCCTCAGAATTCAACTACAAAGGTAAAACTAAAACCTAACCAATCGCAATCACCATGCATTCCGCAACAAGATGAACAAAAGAAGATTCAAACTTGTCAACCTAGCATTCCTCCCCCACCATGTCCACCTCCATTTTTGAAAGGAAACATTAACAGTGCAATCAAAACTCCACCTTCTCTACTTCCTCAAGGTAAGGGTGGAAGTTCTCCACTGCCAAAACTCAAACCACTTCACTGGGACAAAGTAAGAGCCACGCCAGATCGAACAATGGTGTGGGATAAGCTACGAACAAGCTCATTTGAGTTGGACGAGGTAATGATCGAGTCACTCTTTGGCTACAATTTACAAAACTCAGTGAAGAACGACGAAACAAAGAGCAAAACCCCGTCTCCTAGCAAGCATGTACTTGAGCCAAAACGGTTTCAAAACATAGCAATTCTCTCCAAAGCTCTAAATACCACAGCTGAACAAATATGCGAAGCCCTGATACTAGGGAAAGGCTTGTCTTTGGAACAACTAGAGGCACTGGTGAAAATGGTACCCACGAAGGAAGAAGAGGCTAAGCTCTTAAGCTACAAAGGAGACGTCAATGAACTAGGGTCTGCTGAAAAGTTTGTGAGAGCAATGCTTAGCGTACCATTTGCCTTTCAACGAGTGGAAACCATGCTTTACAGAGAGACTTTCGAAGATGAACTATTTCACCTCAGTAACTCTTTTTCAACGCTAGAGGAAGCGTGCAAGGAACTAAGGTCAAACAGGTTCTTCTTGAAATTGCTGGAAGCAGTGCTGAAAACAGGAAACCGCATGAACGTTGGGACAATCAGGGGAGGTGCCAGAGCCTTCAAACTCAACGCCCTTCTGAAGCTTGCTGATGTTAAAGGAACAGATGGTAAAACAACCTTGCTCCATTTCTTTGTTAAGGAGATTGTTCGCTCGGAAGGAATCAAGGCTTCAGAGAGGATCATGGGGCAGAAAAGCGAAAACAGAACGGAGGAAGAGAAGGAAGAAAATTATAAAAGAATAGGACTAGAACTTGTTTCTGATCTAAGTGCTGAGTTATGCAATGTTAAGAAGACAGCCACAATTGACTTGGATGTTCTTGCAAGCTCTATCTCAAACCTATCAAGTGGAGTGGCTAACATGCAGAACCTGGTAAAGGGTCTTTTGTGTGAGGATGAAAAGAGTGAGAGCTTTGTCATTTCTATGAAGTGGTTTCTGAACTATGCAGAGAGAAAGGTACAGGACCTGCAAGGATGTGAAGGGAGAGTCATGGCTCGTGTCAAAGAAATAACAGAGTATTTTCATGGGGATGAGAGTAAAGAAGAGTCGAATCCACTTCGAATCTTTGTGATCGTGAGGGACTTTCTGGAGATGGTAGATAATGTTTGCAATGAGCTTAAAAGGTCGTCTACGAAATCACCTCGCACCATTCGGTTACAGTAG

Predicted protein sequences of Glyma03g39620

Limit To All Plant Sequences

>Glyma03g39620.1   sequence type=predicted peptide   gene model=Glyma03g39620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLDSQAHSMVFIITILIFLSLQNAAGNENQIETISGMDENENKQTPIVENFRTLLGLNMFNTRKPCYNVADSNFVSLSPSLSPNTEAEALAPAPASELHVHPHSYHSHRNLPLHKILKEDKGMAKRTTIVAVVVPGGVATLICALGCVCVCKKFRNHKRKPNRTMPLFSKNERTGCTSTYQNSSSNVSLNSAPDLFYLTCLKQTCDTQNRSTSTHDSPKRTIYEKKVLRKEEYDKASTSSSSTKEILSVHEDLEYQCGKASSGEKTVLRGCHSLPSDNESFHSCFDTHSSVSETETLCLSPRNSISSTNQFPCPPQNSTTKVKLKPNQSQSPCIPQQDEQKKIQTCQPSIPPPPCPPPFLKGNINSAIKTPPSLLPQGKGGSSPLPKLKPLHWDKVRATPDRTMVWDKLRTSSFELDEVMIESLFGYNLQNSVKNDETKSKTPSPSKHVLEPKRFQNIAILSKALNTTAEQICEALILGKGLSLEQLEALVKMVPTKEEEAKLLSYKGDVNELGSAEKFVRAMLSVPFAFQRVETMLYRETFEDELFHLSNSFSTLEEACKELRSNRFFLKLLEAVLKTGNRMNVGTIRGGARAFKLNALLKLADVKGTDGKTTLLHFFVKEIVRSEGIKASERIMGQKSENRTEEEKEENYKRIGLELVSDLSAELCNVKKTATIDLDVLASSISNLSSGVANMQNLVKGLLCEDEKSESFVISMKWFLNYAERKVQDLQGCEGRVMARVKEITEYFHGDESKEESNPLRIFVIVRDFLEMVDNVCNELKRSSTKSPRTIRLQ*

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