Glyma03g39590 - SoyBase

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Report for Sequence Feature Glyma03g39590

Feature Type:	gene_model
Chromosome:	Gm03
Start:	45607800
stop:	45611495
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g39590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05480	AT	Annotation by Michelle Graham. TAIR10: cell cycle checkpoint control protein family \| chr3:1585383-1588238 FORWARD LENGTH=439	SoyBase	E_val: 0	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006282	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA repair	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2810	KOG	Checkpoint 9-1-1 complex, RAD9 component	JGI		ISS
PTHR15237	Panther	DNA REPAIR PROTEIN RAD9	JGI		ISS
PF04139	PFAM	Rad9	JGI		ISS
UniRef100_A2Q329	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rad9 n=1 Tax=Medicago truncatula RepID=A2Q329_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JRA9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JRA9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g39590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g39590

Paralog	Evidence	Comments
Glyma19g42210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g39590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g236100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g39590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g39590

Limit To All Plant Sequences

>Glyma03g39590.2   sequence type=transcript   gene model=Glyma03g39590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAACAAGAAACTCTCTGCACGTATTGGAACTGTGGATCGTGCCCTTCTTCCCGCCAAGGCGCGAACCCTAAATAGGCGCGTTCTGAACCATGTTCACTGTTAAGTGTGTTGTGTCAAACTATGGAGATTACGTTAAGCGACAATGCTCTGAAAACTTTCGCGCGTTGCATCACTTGTCTCGCACGCATAGGAAACGAGCTCGCAATTCAAGCCTCTTCCTCTCAGCTTCTTTTCCACACTATTAATTCATCACGTTCTGCCTATCAATGCATCGCTTTCAAGTCTGGTTTATTTGATGCGTATAACGTTTCCAGCAACTCCCTGCAATGTAGTGTGCTTCTGAAGGCTGTTTGTGCTGTTCTCAGGACACCTATTACGAATATCGACCATTTGACCGTGAGACTGCCTGATCCAGATGCTCCTAAAGTGCAGTGGATTTTGGATTGCTATAATGGTATGAGAAAAACCTATTGGATTACTTGCAATGTAGAACCTGACATACATCACTTGTCCCTTGATAGGCAAAAATTTCCCAGCAACTTTGTTGTGAGGCCTCGAGATCTGAGCAGGTTACTTGCTAATTTTCAGTCATCTCTTCAAGAGATCACTATCATTGCAACAGAACCTTCTTCTCTACTTACTGATGCATCAAATGAAATTGGTGGAAAGGAAGTTGAACTTCGAAGTTATATGGACCCAACCAAAGACAATGATACGTTGCTGCACACCCAACTGTGGATAGATCCTAAAGAAGAATTTTTGCAGTATGTTCATACTGGAGATCCAATAGATGTGACTTTCAGTGTGAAAGAACTGAAGGCATTTCTTTCATTTTGTGAGGGCTGTGAAGTTGATCTCCATTTGCATTTTGAGAAAGCTGGCGAACCTATTCTTATGGCACCTAAATTTGGTTTGGAAGATGGATCTCACTCAAATTTTGATGCCACCCTTGTACTGGCAACCATGTTAATATCTCAGCTTCATGAAGGGGCTGCCTCAGAACCTCCTGTGGGGGCCACCGGAACACACCCTCATACCGAAGAAAGAAATGCATCTCACATGCTGCAAGAGAATTGTAGAGCAAATGTGTCATTTGAGCCTCCATCTGATCACACCCGTATCTGGTCTGACCTCTCAGTGCATTTAAAAGCATTAGTCCTTTGGAAGAACGACAGGCACAAGGAGAAACAATTTTGAATGATGATGGTCAAAGAGAAATTCAAAGGATTAGCACAATGCAAATTTCAGGAGTAGCATCAGTTCCCGGAAATAATCCCATTGATTCCAATGTACCAACTGAAAAGGATCATGGACAAGAGCCTCAAGATGCGATGCAAGATAATGGTCAAGCAATTTCACAACATCACCGCAGTAATTGGGTAGATGCTGAAGAGGATGATGAAGATGAACAGGATGAAGATGAACAGGATATTCAGCCAACACCACCGTACTATGAAGAACATTAATTCAGAGAACTCTACTGTAGTGGTTCTCCTTTACCTCAGTAACTGCTTGTGGCGATTCTCTTAAGTTGCTTTGTCTCTTTAAGTTTCTTTTAATTGATCCAGTAATCTATCAATAAAAGGATTGAATAGCCATAAATTGCTGAGTTTCTTGTATGTATTATATTATTAAATCTTCCCATTAGAAACATCTTGTCTTCTGCAGCCATTTCCTTGTGCATATAAATACACATTAATTTGG

Coding sequences of Glyma03g39590

Limit To All Plant Sequences

>Glyma03g39590.1   sequence type=CDS   gene model=Glyma03g39590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTACGTTAAGCGACAATGCTCTGAAAACTTTCGCGCGTTGCATCACTTGTCTCGCACGCATAGGAAACGAGCTCGCAATTCAAGCCTCTTCCTCTCAGCTTCTTTTCCACACTATTAATTCATCACGTTCTGCCTATCAATGCATCGCTTTCAAGTCTGGTTTATTTGATGCGTATAACGTTTCCAGCAACTCCCTGCAATGTAGTGTGCTTCTGAAGGCTGTTTGTGCTGTTCTCAGGACACCTATTACGAATATCGACCATTTGACCGTGAGACTGCCTGATCCAGATGCTCCTAAAGTGCAGTGGATTTTGGATTGCTATAATGGTATGAGAAAAACCTATTGGATTACTTGCAATGTAGAACCTGACATACATCACTTGTCCCTTGATAGGCAAAAATTTCCCAGCAACTTTGTTGTGAGGCCTCGAGATCTGAGCAGGTTACTTGCTAATTTTCAGTCATCTCTTCAAGAGATCACTATCATTGCAACAGAACCTTCTTCTCTACTTACTGATGCATCAAATGAAATTGGTGGAAAGGAAGTTGAACTTCGAAGTTATATGGACCCAACCAAAGACAATGATACGTTGCTGCACACCCAACTGTGGATAGATCCTAAAGAAGAATTTTTGCAGTATGTTCATACTGGAGATCCAATAGATGTGACTTTCAGTGTGAAAGAACTGAAGGCATTTCTTTCATTTTGTGAGGGCTGTGAAGTTGATCTCCATTTGCATTTTGAGAAAGCTGGCGAACCTATTCTTATGGCACCTAAATTTGGTTTGGAAGATGGATCTCACTCAAATTTTGATGCCACCCTTGTACTGGCAACCATGTTAATATCTCAGCTTCATGAAGGGGCTGCCTCAGAACCTCCTGTGGGGGCCACCGGAACACACCCTCATACCGAAGAAAGAAATGCATCTCACATGCTGCAAGAGAATTGTAGAGCAAATGTGTCATTTGAGCCTCCATCTGATCACACCCGTATCTGGTCTGACCTCTCAGCAAGTGCATTTAAAAGCATTAGTCCTTTGGAAGAACGACAGGCACAAGGAGAAACAATTTTGAATGATGATGGTCAAAGAGAAATTCAAAGGATTAGCACAATGCAAATTTCAGGAGTAGCATCAGTTCCCGGAAATAATCCCATTGATTCCAATGTACCAACTGAAAAGGATCATGGACAAGAGCCTCAAGATGCGATGCAAGATAATGGTCAAGCAATTTCACAACATCACCGCAGTAATTGGGTAGATGCTGAAGAGGATGATGAAGATGAACAGGATGAAGATGAACAGGATATTCAGCCAACACCACCGTACTATGAAGAACATTAA

>Glyma03g39590.2   sequence type=CDS   gene model=Glyma03g39590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTACGTTAAGCGACAATGCTCTGAAAACTTTCGCGCGTTGCATCACTTGTCTCGCACGCATAGGAAACGAGCTCGCAATTCAAGCCTCTTCCTCTCAGCTTCTTTTCCACACTATTAATTCATCACGTTCTGCCTATCAATGCATCGCTTTCAAGTCTGGTTTATTTGATGCGTATAACGTTTCCAGCAACTCCCTGCAATGTAGTGTGCTTCTGAAGGCTGTTTGTGCTGTTCTCAGGACACCTATTACGAATATCGACCATTTGACCGTGAGACTGCCTGATCCAGATGCTCCTAAAGTGCAGTGGATTTTGGATTGCTATAATGGTATGAGAAAAACCTATTGGATTACTTGCAATGTAGAACCTGACATACATCACTTGTCCCTTGATAGGCAAAAATTTCCCAGCAACTTTGTTGTGAGGCCTCGAGATCTGAGCAGGTTACTTGCTAATTTTCAGTCATCTCTTCAAGAGATCACTATCATTGCAACAGAACCTTCTTCTCTACTTACTGATGCATCAAATGAAATTGGTGGAAAGGAAGTTGAACTTCGAAGTTATATGGACCCAACCAAAGACAATGATACGTTGCTGCACACCCAACTGTGGATAGATCCTAAAGAAGAATTTTTGCAGTATGTTCATACTGGAGATCCAATAGATGTGACTTTCAGTGTGAAAGAACTGAAGGCATTTCTTTCATTTTGTGAGGGCTGTGAAGTTGATCTCCATTTGCATTTTGAGAAAGCTGGCGAACCTATTCTTATGGCACCTAAATTTGGTTTGGAAGATGGATCTCACTCAAATTTTGATGCCACCCTTGTACTGGCAACCATGTTAATATCTCAGCTTCATGAAGGGGCTGCCTCAGAACCTCCTGTGGGGGCCACCGGAACACACCCTCATACCGAAGAAAGAAATGCATCTCACATGCTGCAAGAGAATTGTAGAGCAAATGTGTCATTTGAGCCTCCATCTGATCACACCCGTATCTGGTCTGACCTCTCAGTGCATTTAAAAGCATTAGTCCTTTGGAAGAACGACAGGCACAAGGAGAAACAATTTTGA

Predicted protein sequences of Glyma03g39590

Limit To All Plant Sequences

>Glyma03g39590.1   sequence type=predicted peptide   gene model=Glyma03g39590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEITLSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYQCIAFKSGLFDAYNVSSNSLQCSVLLKAVCAVLRTPITNIDHLTVRLPDPDAPKVQWILDCYNGMRKTYWITCNVEPDIHHLSLDRQKFPSNFVVRPRDLSRLLANFQSSLQEITIIATEPSSLLTDASNEIGGKEVELRSYMDPTKDNDTLLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVDLHLHFEKAGEPILMAPKFGLEDGSHSNFDATLVLATMLISQLHEGAASEPPVGATGTHPHTEERNASHMLQENCRANVSFEPPSDHTRIWSDLSASAFKSISPLEERQAQGETILNDDGQREIQRISTMQISGVASVPGNNPIDSNVPTEKDHGQEPQDAMQDNGQAISQHHRSNWVDAEEDDEDEQDEDEQDIQPTPPYYEEH*

>Glyma03g39590.2   sequence type=predicted peptide   gene model=Glyma03g39590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEITLSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYQCIAFKSGLFDAYNVSSNSLQCSVLLKAVCAVLRTPITNIDHLTVRLPDPDAPKVQWILDCYNGMRKTYWITCNVEPDIHHLSLDRQKFPSNFVVRPRDLSRLLANFQSSLQEITIIATEPSSLLTDASNEIGGKEVELRSYMDPTKDNDTLLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVDLHLHFEKAGEPILMAPKFGLEDGSHSNFDATLVLATMLISQLHEGAASEPPVGATGTHPHTEERNASHMLQENCRANVSFEPPSDHTRIWSDLSVHLKALVLWKNDRHKEKQF*

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