Glyma03g39460 - SoyBase

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Report for Sequence Feature Glyma03g39460

Feature Type:	gene_model
Chromosome:	Gm03
Start:	45523542
stop:	45528798
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g39460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14520	AT	Annotation by Michelle Graham. TAIR10: pescadillo-related \| chr5:4680789-4684330 REVERSE LENGTH=590	SoyBase	E_val: 0	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity	SoyBase	N/A	ISS
KOG2481	KOG	Protein required for normal rRNA processing	JGI		ISS
PTHR12221	Panther	PESCADILLO - RELATED	JGI		ISS
PTHR12221:SF6	Panther	UNCHARACTERIZED	JGI		ISS
PF00533	PFAM	BRCA1 C Terminus (BRCT) domain	JGI		ISS
PF06732	PFAM	Pescadillo N-terminus	JGI		ISS
UniRef100_G7L0M1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pescadillo-like protein n=2 Tax=Medicago truncatula RepID=G7L0M1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JR95	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JR95_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g39460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g39460

Paralog	Evidence	Comments
Glyma19g42070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g39460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g234900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g39460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g39460

Limit To All Plant Sequences

>Glyma03g39460.2   sequence type=transcript   gene model=Glyma03g39460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTTCCGCCTCTACCATTCTATAAATTTGAAGTATCCCCCCATACTTGATCCTCAGTTGGAAGCTTTGGCAGCAGATCTATATGCTCTGTCAAGGTATGCCAGTGCCAATACCAGACCCTCTGTACTGATTTCTGAAGCTTCTCAAGCTGAATCTGAACAAGTGGAGACCAAGCAAAAAGAGGCAGAGACTGGAGATAAAACATCTGAACTAAGACTTGCTCAACTTCAGCATCAACTTCCTTCTAATGAACCTGGTGCACTAATGCACCTCGTTGAGGAAGTTACTGGTGAAGATGAAGAGGACCAGGATACAAAAGAATGTAAAAAGCTCTTTAAAAATATGAAATTCTTCGTAAGCAGGGAGGTACCGAGGGAATCAATGTTTTTTGTTATTCCTGCTTTTGGTGGCATTGTTTCCTGGGAGGGAGAAGGGGCACCTTTTGGGGAATCTGACCAGAGCATTTCTCATCAGATTGTTGACAGGGAAGCACAAGGACATCGGTTCCTCTCAAGAGAATATGTTCAACCACAGTGGGTATATGACTGTGTGAATGCATGGATTATTTTGCCAACTGAGAATTATTTGGTGGGAAGGACTCCTCCACCACACTTGTCACCTTTTATTAACTACGATGAAGAAGGAGCATACATTCCTGATTATGCAAAGACCATTAAACACTTGCAAGCTGCTGCCAGAAAGGAAATCCTTCCACTTCCTGGTGTTGGGAAGGAAGATCTGGAAGATCCTCAAAATCTTCTGGTTGAAGGTATCATTGATCGAGCAGAGGCTAATGATGCAGCTCAGAGAAAGCAGAAGATGATGATTTTGGAGCAGCAATACCGTGATGATTTGAAAAAAGAACTTCAAGGTGTTACATATACTTCAGCAGGTTCTAAAGAAACATCTACTGGAGTGGTACAGACTGGTGAATCAACTGCCAGTGTTCAAGAAAATGTTGATGATGACATGAGTAAAGTTATGATGTCACGTAAAAAAAGGAAGCTAGCTGAAGCCATGAAGATATCTAAGAAACTGAAGGAAGCTCAGACTGATCGCATTAAACAACGGAAAAAGAAAATAGATGAAGCTCAAAGGCAAAGGAGTTGAAGAGATGCTGCATTCTCAAGGATTCCAGCACGACTTCATTGTGTCATAGCTGATGATTTGAAAGGTTAAGTCATTTTTGTTCGGAGTATAGGCAGTTGAACTTATTCTAGTCTTGTTCTCTATGTTTTGTAACCGATATGTTTCTAGGCCAAAAAGAAAAAATATTTTGATTTAGCACCGGATGTTTTTATAACATCTCAGGTTTGAGCCTTTGAAAGATTAAACTATGGTTAAGAGACTAGGGGTATTTAAAATCTAATTAAATTATTCTTTATTGTCAAACTGATAAAAAAGAATTGAAAATCAATCAAATTGATAATT

Coding sequences of Glyma03g39460

Limit To All Plant Sequences

>Glyma03g39460.1   sequence type=CDS   gene model=Glyma03g39460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGCATTACAGACCCCCGGGGAAGAAAAAGGAGGGAAATGCTGCCAAATTTGTTATTAGGTCACAGGCACTCAAGCAGCTTCAAATCAGTTTACCCCTTTTTAGGAAACTATGTATTTTGAAAGGTGTAACTCCCCGGGAGCCCAAGAAAAAGTTCAAGGGAACTCATCAGACTTATTACCATGTCAAGGATGTTTCCTTCCTTCATCACGAGCCTTTGGTTGAAATACATAGAGCGATAAGAGTGCATGAGAGAAAAATTAAGAAAGCCGAGGCAAAGAAAAACCTTGAACGTGCTAACAGGCTTCGCGAGAAAACACCCAAACCGAAGATCGCTAGGATTATTCGGCAGAGGTACCCAAGATTTGTGGATGCACTCGGAGAATTGGATGACTGCCTTACAGTGGTGCACCTTTTTGCAGCATTACCTGCATCAGAGAGTAAAAAAATTGACGTGGAGTGTGTCCATAAATGTCGAAGATTGGCACATGAATGGCAAGCATTCGTATCTCGCACTCACAAGTTAAGAAAAACGTTTGTATCTGTGAAAGGCATATACTACCAGTATCCCCCCATACTTGATCCTCAGTTGGAAGCTTTGGCAGCAGATCTATATGCTCTGTCAAGGTATGCCAGTGCCAATACCAGACCCTCTGTACTGATTTCTGAAGCTTCTCAAGCTGAATCTGAACAAGTGGAGACCAAGCAAAAAGAGGCAGAGACTGGAGATAAAACATCTGAACTAAGACTTGCTCAACTTCAGCATCAACTTCCTTCTAATGAACCTGGTGCACTAATGCACCTCGTTGAGGAAGTTACTGGTGAAGATGAAGAGGACCAGGATACAAAAGAATGTAAAAAGCTCTTTAAAAATATGAAATTCTTCGTAAGCAGGGAGGTACCGAGGGAATCAATGTTTTTTGTTATTCCTGCTTTTGGTGGCATTGTTTCCTGGGAGGGAGAAGGGGCACCTTTTGGGGAATCTGACCAGAGCATTTCTCATCAGATTGTTGACAGGGAAGCACAAGGACATCGGTTCCTCTCAAGAGAATATGTTCAACCACAGTGGGTATATGACTGTGTGAATGCATGGATTATTTTGCCAACTGAGAATTATTTGGTGGGAAGGACTCCTCCACCACACTTGTCACCTTTTATTAACTACGATGAAGAAGGAGCATACATTCCTGATTATGCAAAGACCATTAAACACTTGCAAGCTGCTGCCAGAAAGGAAATCCTTCCACTTCCTGGTGTTGGGAAGGAAGATCTGGAAGATCCTCAAAATCTTCTGGTTGAAGGTATCATTGATCGAGCAGAGGCTAATGATGCAGCTCAGAGAAAGCAGAAGATGATGATTTTGGAGCAGCAATACCGTGATGATTTGAAAAAAGAACTTCAAGGTGTTACATATACTTCAGCAGGTTCTAAAGAAACATCTACTGGAGTGGTACAGACTGGTGAATCAACTGCCAGTGTTCAAGAAAATGTTGATGATGACATGAGTAAAGTTATGATGTCACGTAAAAAAAGGAAGCTAGCTGAAGCCATGAAGATATCTAAGAAACTGAAGGAAGCTCAGACTGATCGCATTAAACAACGGAAAAAGAAAATAGATGAAGCTCAAAGGCAAAGGAGTTGA

>Glyma03g39460.2   sequence type=CDS   gene model=Glyma03g39460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACCTCGTTGAGGAAGTTACTGGTGAAGATGAAGAGGACCAGGATACAAAAGAATGTAAAAAGCTCTTTAAAAATATGAAATTCTTCGTAAGCAGGGAGGTACCGAGGGAATCAATGTTTTTTGTTATTCCTGCTTTTGGTGGCATTGTTTCCTGGGAGGGAGAAGGGGCACCTTTTGGGGAATCTGACCAGAGCATTTCTCATCAGATTGTTGACAGGGAAGCACAAGGACATCGGTTCCTCTCAAGAGAATATGTTCAACCACAGTGGGTATATGACTGTGTGAATGCATGGATTATTTTGCCAACTGAGAATTATTTGGTGGGAAGGACTCCTCCACCACACTTGTCACCTTTTATTAACTACGATGAAGAAGGAGCATACATTCCTGATTATGCAAAGACCATTAAACACTTGCAAGCTGCTGCCAGAAAGGAAATCCTTCCACTTCCTGGTGTTGGGAAGGAAGATCTGGAAGATCCTCAAAATCTTCTGGTTGAAGGTATCATTGATCGAGCAGAGGCTAATGATGCAGCTCAGAGAAAGCAGAAGATGATGATTTTGGAGCAGCAATACCGTGATGATTTGAAAAAAGAACTTCAAGGTGTTACATATACTTCAGCAGGTTCTAAAGAAACATCTACTGGAGTGGTACAGACTGGTGAATCAACTGCCAGTGTTCAAGAAAATGTTGATGATGACATGAGTAAAGTTATGATGTCACGTAAAAAAAGGAAGCTAGCTGAAGCCATGAAGATATCTAAGAAACTGAAGGAAGCTCAGACTGATCGCATTAAACAACGGAAAAAGAAAATAGATGAAGCTCAAAGGCAAAGGAGTTGA

Predicted protein sequences of Glyma03g39460

Limit To All Plant Sequences

>Glyma03g39460.1   sequence type=predicted peptide   gene model=Glyma03g39460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKHYRPPGKKKEGNAAKFVIRSQALKQLQISLPLFRKLCILKGVTPREPKKKFKGTHQTYYHVKDVSFLHHEPLVEIHRAIRVHERKIKKAEAKKNLERANRLREKTPKPKIARIIRQRYPRFVDALGELDDCLTVVHLFAALPASESKKIDVECVHKCRRLAHEWQAFVSRTHKLRKTFVSVKGIYYQYPPILDPQLEALAADLYALSRYASANTRPSVLISEASQAESEQVETKQKEAETGDKTSELRLAQLQHQLPSNEPGALMHLVEEVTGEDEEDQDTKECKKLFKNMKFFVSREVPRESMFFVIPAFGGIVSWEGEGAPFGESDQSISHQIVDREAQGHRFLSREYVQPQWVYDCVNAWIILPTENYLVGRTPPPHLSPFINYDEEGAYIPDYAKTIKHLQAAARKEILPLPGVGKEDLEDPQNLLVEGIIDRAEANDAAQRKQKMMILEQQYRDDLKKELQGVTYTSAGSKETSTGVVQTGESTASVQENVDDDMSKVMMSRKKRKLAEAMKISKKLKEAQTDRIKQRKKKIDEAQRQRS*

>Glyma03g39460.2   sequence type=predicted peptide   gene model=Glyma03g39460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLVEEVTGEDEEDQDTKECKKLFKNMKFFVSREVPRESMFFVIPAFGGIVSWEGEGAPFGESDQSISHQIVDREAQGHRFLSREYVQPQWVYDCVNAWIILPTENYLVGRTPPPHLSPFINYDEEGAYIPDYAKTIKHLQAAARKEILPLPGVGKEDLEDPQNLLVEGIIDRAEANDAAQRKQKMMILEQQYRDDLKKELQGVTYTSAGSKETSTGVVQTGESTASVQENVDDDMSKVMMSRKKRKLAEAMKISKKLKEAQTDRIKQRKKKIDEAQRQRS*

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