Glyma03g39390 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g39390

Feature Type:	gene_model
Chromosome:	Gm03
Start:	45490954
stop:	45493555
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g39390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05600	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr3:1623485-1624704 REVERSE LENGTH=331	SoyBase	E_val: 3.00E-146	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: epoxide hydrolase activity	SoyBase	N/A	ISS
KOG4178	KOG	Soluble epoxide hydrolase	JGI		ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF279	Panther	EPOXIDE HYDROLASE-RELATED	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_C6T8Y6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T8Y6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E5L4L1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Epoxide hydrolase A n=1 Tax=Vigna radiata RepID=E5L4L1_VIGRA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g39390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g39390

Paralog	Evidence	Comments
Glyma19g41990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g39390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g234300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g39390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g39390

Limit To All Plant Sequences

>Glyma03g39390.2   sequence type=transcript   gene model=Glyma03g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCAGGTAGCTAGGCAAAGTAGTCATATTGGGAATTCTTTAAACATTTCTTGTGGTGGAAACTCACTTTGGTAGAAATATTTAATTGTTTTTTGTCTTTGGTTTTCGCGTTGTATATACTTTAATATTTTGTCTTCATAGTTTCATAAATTTAGATTTTCGACCTTAATAATTGTTTCTGTCTTGATTATAATTTTTAAATTTAAATTTTAGTCGTTATAATTTTATATTGTCTTGATTTTCGTCCATATAATTGTATTCTATTTAGGTTTAATTTTATTAATATTCTAGATATATAAAGGTGCAAATGATAATATATTAACAAGGCATGTGTTTTGGCATATTGCTAGTATTAAGAACTGAAACTCAACTTCTCAAAACTATAGGGTTTAAATAATAAGATTTAACATATATGATTTTCTTAAAAGCAAATTATAAGGAGTAATTAAAACTTTATTTAAGAAAAAAATAAAATGTTTTCACATAAAAATTGAGATCGTGCTAGAAAATTTTAATGAATTCAGAAAATATATACTAGTATATACAATTTTCCAAAATGAATCCACCCCGTCTATTTATAAGATGAGTTAGAAGAGTTAAGCGTGACAGTGAAGAGATGGAAGGCATAGTACACAGGACAGTTGAAGTGAATGGCATAAAAATGCATGTTGCTGAGAAAGGTGAAGGTCCCGTGGTCTTGTTCCTCCACGGCTTCCCGGAGCTCTGGTACTCCTGGCGCCACCAGATTCTGGCTCTCAGCAACCTCGGCTACCGCGCCGTGGCTCCAGATCTCCGCGGCTACGGAGACACCGAGGCACCAGCTTCAATCAGCAGCTACACCATCCTCCACTTAGTTTCTGACATCGTCGCGCTCATTCACTCACTTGCTGTGGATCAAGTCTTCCTCGTAGCCCATGATTGGGGGGCTGTCATAGGTTGGTACCTCTGCTTGTTTCGCCCCGACAGAATCAAGGCCTATGTTTGTCTCAGTGTCCCTTTCATGCCTAGAAACCCTAAAGTCAAGCCCGTTGATGCCATGCGGGCCCTATATGGAGATGACTACTACATCTGCAGATTCCAGGAACCAGGCAAGGCGGAAGCTGAGTTTGCCAACAATAGCATTGAACAAGTAATCAAGAACATACTAACAAGTCGGAGACCTGGACCACCAATCCTGCGCAAAGAAGGAGCAGGTTCCAATTCCGATCCTTCAAGGCCTCTTCCCACTTGGCTCTCACAAGAAGATGTCACTTATTATGCTTCTAAATTTACTAAGACAGGCTTAACTGGGGGCCTCAACTACTATAGAAATCTCAACCTGTAAGTACCTTTTTCCAATGTGAATTGCAGGATTGTTTCAATATAGCTTATTCTATTACTGTGCATTA

Coding sequences of Glyma03g39390

Limit To All Plant Sequences

>Glyma03g39390.1   sequence type=CDS   gene model=Glyma03g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGCATAGTACACAGGACAGTTGAAGTGAATGGCATAAAAATGCATGTTGCTGAGAAAGGTGAAGGTCCCGTGGTCTTGTTCCTCCACGGCTTCCCGGAGCTCTGGTACTCCTGGCGCCACCAGATTCTGGCTCTCAGCAACCTCGGCTACCGCGCCGTGGCTCCAGATCTCCGCGGCTACGGAGACACCGAGGCACCAGCTTCAATCAGCAGCTACACCATCCTCCACTTAGTTTCTGACATCGTCGCGCTCATTCACTCACTTGCTGTGGATCAAGTCTTCCTCGTAGCCCATGATTGGGGGGCTGTCATAGGTTGGTACCTCTGCTTGTTTCGCCCCGACAGAATCAAGGCCTATGTTTGTCTCAGTGTCCCTTTCATGCCTAGAAACCCTAAAGTCAAGCCCGTTGATGCCATGCGGGCCCTATATGGAGATGACTACTACATCTGCAGATTCCAGGAACCAGGCAAGGCGGAAGCTGAGTTTGCCAACAATAGCATTGAACAAGTAATCAAGAACATACTAACAAGTCGGAGACCTGGACCACCAATCCTGCGCAAAGAAGGAGCAGGTTCCAATTCCGATCCTTCAAGGCCTCTTCCCACTTGGCTCTCACAAGAAGATGTCACTTATTATGCTTCTAAATTTACTAAGACAGGCTTAACTGGGGGCCTCAACTACTATAGAAATCTCAACCTAAATTGGGAACTCACAGCACCATGGACTGGAGTTCAAGTCAAAGTTCCCGTGAAGTTCATTACAGGTGATTTGGATGCAGTATACACTTCACTAGGGATGAAGAACTATATAGAGAGCGGCGCTTTCAAGAAAGATGTGCCATGTTTGGAGGAAGTGGTTGTGCAGGAAGGGGTGGCTCACTTCAACAACCAAGAAGCTGCAGAGGATGTCACTAATCACATTTATGATTTTATCAACAAGTTCTGA

>Glyma03g39390.2   sequence type=CDS   gene model=Glyma03g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGCATAGTACACAGGACAGTTGAAGTGAATGGCATAAAAATGCATGTTGCTGAGAAAGGTGAAGGTCCCGTGGTCTTGTTCCTCCACGGCTTCCCGGAGCTCTGGTACTCCTGGCGCCACCAGATTCTGGCTCTCAGCAACCTCGGCTACCGCGCCGTGGCTCCAGATCTCCGCGGCTACGGAGACACCGAGGCACCAGCTTCAATCAGCAGCTACACCATCCTCCACTTAGTTTCTGACATCGTCGCGCTCATTCACTCACTTGCTGTGGATCAAGTCTTCCTCGTAGCCCATGATTGGGGGGCTGTCATAGGTTGGTACCTCTGCTTGTTTCGCCCCGACAGAATCAAGGCCTATGTTTGTCTCAGTGTCCCTTTCATGCCTAGAAACCCTAAAGTCAAGCCCGTTGATGCCATGCGGGCCCTATATGGAGATGACTACTACATCTGCAGATTCCAGGAACCAGGCAAGGCGGAAGCTGAGTTTGCCAACAATAGCATTGAACAAGTAATCAAGAACATACTAACAAGTCGGAGACCTGGACCACCAATCCTGCGCAAAGAAGGAGCAGGTTCCAATTCCGATCCTTCAAGGCCTCTTCCCACTTGGCTCTCACAAGAAGATGTCACTTATTATGCTTCTAAATTTACTAAGACAGGCTTAACTGGGGGCCTCAACTACTATAGAAATCTCAACCTGTAA

Predicted protein sequences of Glyma03g39390

Limit To All Plant Sequences

>Glyma03g39390.1   sequence type=predicted peptide   gene model=Glyma03g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGIVHRTVEVNGIKMHVAEKGEGPVVLFLHGFPELWYSWRHQILALSNLGYRAVAPDLRGYGDTEAPASISSYTILHLVSDIVALIHSLAVDQVFLVAHDWGAVIGWYLCLFRPDRIKAYVCLSVPFMPRNPKVKPVDAMRALYGDDYYICRFQEPGKAEAEFANNSIEQVIKNILTSRRPGPPILRKEGAGSNSDPSRPLPTWLSQEDVTYYASKFTKTGLTGGLNYYRNLNLNWELTAPWTGVQVKVPVKFITGDLDAVYTSLGMKNYIESGAFKKDVPCLEEVVVQEGVAHFNNQEAAEDVTNHIYDFINKF*

>Glyma03g39390.2   sequence type=predicted peptide   gene model=Glyma03g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGIVHRTVEVNGIKMHVAEKGEGPVVLFLHGFPELWYSWRHQILALSNLGYRAVAPDLRGYGDTEAPASISSYTILHLVSDIVALIHSLAVDQVFLVAHDWGAVIGWYLCLFRPDRIKAYVCLSVPFMPRNPKVKPVDAMRALYGDDYYICRFQEPGKAEAEFANNSIEQVIKNILTSRRPGPPILRKEGAGSNSDPSRPLPTWLSQEDVTYYASKFTKTGLTGGLNYYRNLNL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain