SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g39311

Feature Type:gene_model
Chromosome:Gm03
Start:45447458
stop:45450990
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g39311
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56260AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:21064647-21065577 REVERSE LENGTH=127 SoyBaseE_val: 7.00E-23ISS
GO:0006661GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process SoyBaseN/AISS
GO:0019827GO-bp Annotation by Michelle Graham. GO Biological Process: stem cell maintenance SoyBaseN/AISS
GO:0048367GO-bp Annotation by Michelle Graham. GO Biological Process: shoot development SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1H3L8UniRef Annotation by Michelle Graham. Most informative UniRef hit: CST complex subunit TEN1-like protein n=1 Tax=Brachypodium distachyon RepID=I1H3L8_BRADI SoyBaseE_val: 1.00E-22ISS
UniRef100_I1JR79UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JR79_SOYBN SoyBaseE_val: 3.00E-53ISS

Expression Patterns of Glyma03g39311
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g39311 not represented in the dataset
Glyma03g39311 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g39311
ParalogEvidenceComments
Glyma19g41880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g39311 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g233600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g39311
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g39311
>Glyma03g39311.2   sequence type=transcript   gene model=Glyma03g39311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAGAACTTAAGTTACATTCTATCAACAAATTAAAGACCTCAAACAAATAATGACTTTATCATCCGAGTCCCCTGAATGCGCGGCCGTTATGATCTAGCAAATTTCAATATATCATACATGACTACTAATGGTGGTGTGATATGCTGTTACGTGAGCCAAGTTGGCAAATTGAAGGTTGTGATTAATGCTTTCGGGGAAAACAAGACTACAAGAGTGTCTCGTTGAAAGCGCTTCATTTGTTCAAGTTGTTCGTGCTGAATGAAGAGAAGCAACGTGGAGTTATTGATATCCTAAGGTTGAAAAAGACAAAGCTTCTCTAGTTCCTGAGTCGGAGAAATCAGCTTGCTGGATCAACAACCCCTCCACAATAACGTCGCTTGGTGCTCGTTTATGGCGCCGTCACATCCTGACGAATCTCCACCGCGGATTGCTGAATGTTTTGCCGTTTTGTGTTCTAGTTCTAGCTTAGAGGATGTGCTACAAAGGTGATGGCATCTTTGGAAATAAAATCTGGTGCATTGGTTTCTTTACAAGACCTGCGCCCATCATCTCCTTTTTTTGAGCAAGGTGCTTCGCTCAGAATAACTGGAAAGTTGCACGAATACTCTATAGAGACAGGCCTAGCAACAATTATTGATGGTGATGACATTCTAAAAGTTAGTACCAAACATCTGAGGGACCTTACTTTTCAAGTTGGCTCTGTCTACCAATTCATTAGTGAACTCCTTATCCAAGCTGTAATGAGGGAGTTTTGCAAGCACGTGTTGGTAGAAACGTTGATGGGATTGATCTAAATCTTTATCATCAGTCCCTGCTGTTTTTAAGACAGTTTCAAGCCAATCATTTAAACAATCCAGCAACTGCGTAGGAGTATTTGAACACAAAAGTCGCCATGCTAATATAAAAATACTTTATTCTCATAATATAAAGAAAGATGAAAGGTTGCTCCGTAAACTATTTTCATAGCAATATGCTATACAGAGATACTGAATGCCTAGGCATTTCTATGTGTTTTTCACATGAAGGCGTGGTGTTCTGCAGACTACAGTGCTCATCATGTAAACAGAATCTTAACAATGTTCACGATGTCATTTCATTTTATTTTATTCTCACTTTTTTTGGCTGCAAAAGGGTCATGGCATCAAAGATCGTTAGGTATGAGTTAGGCTTAGCTGGGATGCTTCACGGGGGCATTTAGTTTTTCATGTGAAGCTATGCAACAAACTTTGACCATCTCTTGTTTTGCAACCTTAAAAACTAGGTGAGGGAGGGGGAGGGGTGGTGGTATATTTAAGGCAACATAGAAGATATTTTAATACATGTCAGCTGTCTCTTTTTTGTGTTACATTACTATTTCAACTTCTCTGTAGCATTTGTATTCTACATGGTCGTACATATTTCCATGTGCTGCATTGTGGTGAAAAAGGCACAACTCAACATACAAATTACCAAGAAATTCTCACATTATTATCCACCACCCATACAAAATTCTGGGTGTTGAATTTGCAAATTTATGTTGACATGCAATGATTT

>Glyma03g39311.3   sequence type=transcript   gene model=Glyma03g39311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAGAACTTAAGTTACATTCTATCAACAAATTAAAGACCTCAAACAAATAATGACTTTATCATCCGAGTCCCCTGAATGCGCGGCCGTTATGATCTAGCAAATTTCAATATATCATACATGACTACTAATGGTGGTGTGATATGCTGTTACGTGAGCCAAGTTGGCAAATTGAAGGTTGTGATTAATGCTTTCGGGGAAAACAAGACTACAAGAGTGTCTCGTTGAAAGCGCTTCATTTGTTCAAGTTGTTCGTGCTGAATGAAGAGAAGCAACGTGGAGTTATTGATATCCTAAGGTTGAAAAAGACAAAGCTTCTCTAGTTCCTGAGTCGGAGAAATCAGCTTGCTGGATCAACAACCCCTCCACAATAACGTCGCTTGGTGCTCGTTTATGGCGCCGTCACATCCTGACGAATCTCCACCGCGGATTGCTGAATGTTTTGCCGTTTTGTGTTCTAGTTCTAGCTTAGAGGATGTGCTACAAAGGCATTAGTGATGGCATCTTTGGAAATAAAATCTGGTGCATTGGTTTCTTTACAAGACCTGCGCCCATCATCTCCTTTTTTTGAGCAAGGTGCTTCGCTCAGAATAACTGGAAAGTTGCACGAATACTCTATAGAGACAGGCCTAGCAACAATTATTGATGGTGATGACATTCTAAAAGTTAGTACCAAACATCTGAGGGACCTTACTTTTCAAGTTGGCTCTGTCTACCAATTCATTAGTGAACTCCTTATCCAAGCTGTAATGAGGGAGTTTTGCAAGCACGTGTTGGTAGAAACGTTGATGGGATTGATCTAAATCTTTATCATCAGTCCCTGCTGTTTTTAAGACAGTTTCAAGCCAATCATTTAAACAATCCAGCAACTGCGTAGGAGTATTTGAACACAAAAGTCGCCATGCTAATATAAAAATACTTTATTCTCATAATATAAAGAAAGATGAAAGGTTGCTCCGTAAACTATTTTCATAGCAATATGCTATACAGAGATACTGAATGCCTAGGCATTTCTATGTGTTTTTCACATGAAGGCGTGGTGTTCTGCAGACTACAGTGCTCATCATGTAAACAGAATCTTAACAATGTTCACGATGTCATTTCATTTTATTTTATTCTCACTTTTTTTGGCTGCAAAAGGGTCATGGCATCAAAGATCGTTAGGTATGAGTTAGGCTTAGCTGGGATGCTTCACGGGGGCATTTAGTTTTTCATGTGAAGCTATGCAACAAACTTTGACCATCTCTTGTTTTGCAACCTTAAAAACTAGGTGAGGGAGGGGGAGGGGTGGTGGTATATTTAAGGCAACATAGAAGATATTTTAATACATGTCAGCTGTCTCTTTTTTGTGTTACATTACTATTTCAACTTCTCTGTAGCATTTGTATTCTACATGGTCGTACATATTTCCATGTGCTGCATTGTGGTGAAAAAGGCACAACTCAACATACAAATTACCAAGAAATTCTCACATTATTATCCACCACCCATACAAAATTCTGGGTGTTGAATTTGCAAATTTATGTTGACATGCAATGATTT
Coding sequences of Glyma03g39311
>Glyma03g39311.1   sequence type=CDS   gene model=Glyma03g39311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAGTGAAAGTTTTATTTGGTTTCAGGTGATGGCATCTTTGGAAATAAAATCTGGTGCATTGGTTTCTTTACAAGACCTGCGCCCATCATCTCCTTTTTTTGAGCAAGGTGCTTCGCTCAGAATAACTGGAAAGTTGCACGAATACTCTATAGAGACAGGCCTAGCAACAATTATTGATGGTGATGACATTCTAAAAGTTAGTACCAAACATCTGAGGGACCTTACTTTTCAAGTTGGCTCTGTCTACCAATTCATTAGTGAACTCCTTATCCAAGCTGTAATGAGGGAGTTTTGCAAGCACGTGTTGGTAGAAACGTTGATGGGATTGATCTAA

>Glyma03g39311.2   sequence type=CDS   gene model=Glyma03g39311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTTGGAAATAAAATCTGGTGCATTGGTTTCTTTACAAGACCTGCGCCCATCATCTCCTTTTTTTGAGCAAGGTGCTTCGCTCAGAATAACTGGAAAGTTGCACGAATACTCTATAGAGACAGGCCTAGCAACAATTATTGATGGTGATGACATTCTAAAAGTTAGTACCAAACATCTGAGGGACCTTACTTTTCAAGTTGGCTCTGTCTACCAATTCATTAGTGAACTCCTTATCCAAGCTGTAATGAGGGAGTTTTGCAAGCACGTGTTGGTAGAAACGTTGATGGGATTGATCTAA

>Glyma03g39311.3   sequence type=CDS   gene model=Glyma03g39311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTTGGAAATAAAATCTGGTGCATTGGTTTCTTTACAAGACCTGCGCCCATCATCTCCTTTTTTTGAGCAAGGTGCTTCGCTCAGAATAACTGGAAAGTTGCACGAATACTCTATAGAGACAGGCCTAGCAACAATTATTGATGGTGATGACATTCTAAAAGTTAGTACCAAACATCTGAGGGACCTTACTTTTCAAGTTGGCTCTGTCTACCAATTCATTAGTGAACTCCTTATCCAAGCTGTAATGAGGGAGTTTTGCAAGCACGTGTTGGTAGAAACGTTGATGGGATTGATCTAA
Predicted protein sequences of Glyma03g39311
>Glyma03g39311.1   sequence type=predicted peptide   gene model=Glyma03g39311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KSESFIWFQVMASLEIKSGALVSLQDLRPSSPFFEQGASLRITGKLHEYSIETGLATIIDGDDILKVSTKHLRDLTFQVGSVYQFISELLIQAVMREFCKHVLVETLMGLI*

>Glyma03g39311.2   sequence type=predicted peptide   gene model=Glyma03g39311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLEIKSGALVSLQDLRPSSPFFEQGASLRITGKLHEYSIETGLATIIDGDDILKVSTKHLRDLTFQVGSVYQFISELLIQAVMREFCKHVLVETLMGLI*

>Glyma03g39311.3   sequence type=predicted peptide   gene model=Glyma03g39311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLEIKSGALVSLQDLRPSSPFFEQGASLRITGKLHEYSIETGLATIIDGDDILKVSTKHLRDLTFQVGSVYQFISELLIQAVMREFCKHVLVETLMGLI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo