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Report for Sequence Feature Glyma03g39200

Feature Type:gene_model
Chromosome:Gm03
Start:45372999
stop:45374525
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g39200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56300AT Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr1:21079022-21080168 REVERSE LENGTH=156 SoyBaseE_val: 1.00E-67ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0031072GO-mf Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding SoyBaseN/AISS
PTHR24077Panther FAMILY NOT NAMED JGI ISS
PTHR24077:SF66Panther JGI ISS
PF00226PFAM DnaJ domain JGI ISS
UniRef100_C6TFV6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TFV6_SOYBN SoyBaseE_val: 2.00E-117ISS
UniRef100_D5FNB3UniRef Annotation by Michelle Graham. Most informative UniRef hit: DnaJ-like protein n=1 Tax=Glycine max RepID=D5FNB3_SOYBN SoyBaseE_val: 2.00E-116ISS

Expression Patterns of Glyma03g39200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g39200
ParalogEvidenceComments
Glyma19g41760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g39200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g232700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g39200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g39200
>Glyma03g39200.2   sequence type=transcript   gene model=Glyma03g39200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGGTACATTGAGATACCTAATTCCACAGAGTAATAATTAGATTTGATTTAGTGACACCCGTTCTTCAACAAAATAGGAAATATGAAAAAAGAAGAGTGGCAGGGTGGTGTAATTTCCACTAAGCAGCGCGAAAATATCTTATAGTCCTTCTTTCCTATGGCCAGGCCAAGGCGTCTGGAAGTTTCTTCCCAAATATCTATCTATCTAAGTATTTATCCCCCACGAAACAAAAGGCACCAAGGACTAGATATTTTTTTCTCTCTCCTCTTCGCCGCTAATTAACCCTTTTCTCCCCAGCATTCAATTTCTATTAGTATCCAAACCTTGATTGCGTTCTTGGATTTTCTTGTGGGTAGGGGGTTTCTCCTCTCTTTCTCTGCAGTTTGATGGATCGGGAAGGAGGATCCAACGCCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGATGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCTGAATCCCGCAACCGCCGGCGAAGCCAAGCGCCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGTCCGTAAAGTTTTTTCCTTTCATTTTTTTTCAATTACTATTTTTATAAGAAAAAAAAATGTTTTTTTTTTAATGAGCAGGATTTTTGTGACTTCATGCAAGAGATGATCTCGATGATGAACAATGTGAAAGACGAGGTAGTGATTTTGATGATGGGTTTTGTTTTTGGTTTTTGGGAAAGACGTAGGTAAATGTGTTTGATTGTGGTTGTAGGGGGACAGTTTGGAGGACCTACAGAGGATGTTCGTGGATATGGTGGGGGGAGATCATGGCCATGGAATCGGCGTTGACTTGAACCAAGATCGAACGGCTGGAAAGCGAGGACGAGTATATGGATCGAAGGGCAACGCGCCCAAGCGCAGCAACTCTCGCAGTTAGTGCGCCGTACTGAATCCATCTTGTAATTTTCTTTACACATTGGATGATTGAAATGAAAATCCTTTTACTAGATTGGTAATGCTCTTTAGTTATTAGTTATGGAACAATAGATCAAGTGCAACTGTGCAAATTGTGCTTTGCATTCTAATACTGCCCTTTGGGGCTTCTTTTTTTTCCTGCCAAAAATATAGTGATTCAGTTCAGAGGATTAACATTTTCGTGACGCATTTCGATATCCTTGTGTTTTGTGTTCTTCTAATGACACGTGTATGACATGCTAAACTATTGA
Coding sequences of Glyma03g39200
>Glyma03g39200.1   sequence type=CDS   gene model=Glyma03g39200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGGGAAGGAGGATCCAACGCCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGATGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCTGAATCCCGCAACCGCCGGCGAAGCCAAGCGCCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGATTTTTGTGACTTCATGCAAGAGATGATCTCGATGATGAACAATGTGAAAGACGAGGGGGACAGTTTGGAGGACCTACAGAGGATGTTCGTGGATATGGTGGGGGGAGATCATGGCCATGGAATCGGCGTTGACTTGAACCAAGATCGAACGGCTGGAAAGCGAGGACGAGTATATGGATCGAAGGGCAACGCGCCCAAGCGCAGCAACTCTCGCAGTTAG

>Glyma03g39200.2   sequence type=CDS   gene model=Glyma03g39200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGGGAAGGAGGATCCAACGCCGGATCTTGCTACTACTCCGTTCTCGGGATTCGTAGGGATGCCTCCTTCTCTGATATTCGCACTGCCTACCGCAAACTCGCTATGAGGTGGCACCCGGACAAGTGGGCTCTGAATCCCGCAACCGCCGGCGAAGCCAAGCGCCGGTTTCAGCAAATCCAAGAAGCCTACTCAGTTCTCTCCGATCAGTCTAAAAGGTCAATGTACGATGCGGGGCTCTACGATCCTTTGGAGGAAGAAGACCAAGTCCGTAAAGTTTTTTCCTTTCATTTTTTTTCAATTACTATTTTTATAAGAAAAAAAAATGTTTTTTTTTTAATGAGCAGGATTTTTGTGACTTCATGCAAGAGATGA
Predicted protein sequences of Glyma03g39200
>Glyma03g39200.1   sequence type=predicted peptide   gene model=Glyma03g39200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDREGGSNAGSCYYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWALNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQDFCDFMQEMISMMNNVKDEGDSLEDLQRMFVDMVGGDHGHGIGVDLNQDRTAGKRGRVYGSKGNAPKRSNSRS*

>Glyma03g39200.2   sequence type=predicted peptide   gene model=Glyma03g39200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDREGGSNAGSCYYSVLGIRRDASFSDIRTAYRKLAMRWHPDKWALNPATAGEAKRRFQQIQEAYSVLSDQSKRSMYDAGLYDPLEEEDQVRKVFSFHFFSITIFIRKKNVFFLMSRIFVTSCKR*






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