SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05760 | AT | Annotation by Michelle Graham. TAIR10: C2H2 and C2HC zinc fingers superfamily protein | chr3:1707981-1709910 FORWARD LENGTH=202 | SoyBase | E_val: 7.00E-95 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG4727 | KOG | U1-like Zn-finger protein | JGI | ISS | |
| PTHR23067 | Panther | DOUBLE-STRANDED RNA-BINDING ZINC FINGER PROTEIN | JGI | ISS | |
| PTHR23067:SF5 | Panther | P53-INDUCIBLE ZINC FINGER PROTEIN | JGI | ISS | |
| PF12171 | PFAM | Zinc-finger double-stranded RNA-binding | JGI | ISS | |
| UniRef100_B9RFH7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RFH7_RICCO | SoyBase | E_val: 7.00E-93 | ISS |
| UniRef100_I1JR59 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JR59_SOYBN | SoyBase | E_val: 4.00E-144 | ISS |
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Glyma03g39120 not represented in the dataset |
Glyma03g39120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g41680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g231900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g39120.2 sequence type=transcript gene model=Glyma03g39120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTAAGTGCAGAATTCCGTCGATGGTTTTGGAGAATTCTTTTTTCTTTTCAAATTATTAACATGATTAGCTTGAATCAGGTCGCTGGGGTCGACAACACATTCAGAAGAAAATTTGATCGAGAAGAGTATCTGGAACGAGCACGGGAGCGCGAGAGACAGGAGGAAGAAGGTCGAGCGAAACCTAAAGGTAAAGGTCCTCCCGTGCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGCAAGACTCAGGTTGTTACGCCGGTTGCACCGCTAAGTCAGCAGGCTGGATACTACTGCTCAGTTTGTGAGTGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTAGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCGAACAGGTTCAGGAACGATTTGAAGTTCTTAAGAAGCGTAAAGATGTTGGCAGCTTCACAGAGCAAGATCTTGATGAGCGGATTTTAAAACAGCAGCAAGAAGAGGAAGAAAGAAAGCGACTGCGTCGAGAAAAGAAAAAAGAAAAGAAGGAGAAGGCAGTTGAAGAACCTGAAATTGATCCTGATGTTGCTGCCATGATGGGATTTGGAGGTTTCCGGTCATCCAACAAGAAATGATTGCATTCTGCATGAGGGATTAAACTGTGTTTGAAATTTTGGAACAATTATTCTGCAATGATAAGCTGAATCTCGTATCTTCCAGCCCGATTTTGGGTGTAGCTTAAAGATTATTCTGTGGTGAATAGTTAAATAGTTGGGCTGCTCAAACAGTAGTATGGGTGCTGGTGCATTGCGTTATATTCAGTCATGTGATTCGGTTGATTCATGTACATTTCTTCTGATAGCTAACCTGATGTATTATACAAGCTTGATATTTGTAGTCTCTACTATGCTCTGAGAAGTGACAACTTGCGGTAGCTAATGGAAATCAATTATGAACATTCGATACAATTCTATACTGGACTGTAGCTTTTCGTGGGTATGGTCATTTTGATTTAGAAATATGACTGCAGTAGGCTTTCTTCTGAATGATCGTTCTATTATGCATGCTTAACACATGCTCAACATTCTTGCCAGCCTACTGGAACATGCA
>Glyma03g39120.1 sequence type=CDS gene model=Glyma03g39120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTAACACCAGCAACAATGTCGCTGGGGTCGACAACACATTCAGAAGAAAATTTGATCGAGAAGAGTATCTGGAACGAGCACGGGAGCGCGAGAGACAGGAGGAAGAAGGTCGAGCGAAACCTAAAGGTAAAGGTCCTCCCGTGCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGCAAGACTCAGGTTGTTACGCCGGTTGCACCGCTAAGTCAGCAGGCTGGATACTACTGCTCAGTTTGTGAGTGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTAGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCGAACAGGTTCAGGAACGATTTGAAGTTCTTAAGAAGCGTAAAGATGTTGGCAGCTTCACAGAGCAAGATCTTGATGAGCGGATTTTAAAACAGCAGCAAGAAGAGGAAGAAAGAAAGCGACTGCGTCGAGAAAAGAAAAAAGAAAAGAAGGAGAAGGCAGTTGAAGAACCTGAAATTGATCCTGATGTTGCTGCCATGATGGGATTTGGAGGTTTCCGGTCATCCAACAAGAAATGA >Glyma03g39120.2 sequence type=CDS gene model=Glyma03g39120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTAGCTTGAATCAGGTCGCTGGGGTCGACAACACATTCAGAAGAAAATTTGATCGAGAAGAGTATCTGGAACGAGCACGGGAGCGCGAGAGACAGGAGGAAGAAGGTCGAGCGAAACCTAAAGGTAAAGGTCCTCCCGTGCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGCAAGACTCAGGTTGTTACGCCGGTTGCACCGCTAAGTCAGCAGGCTGGATACTACTGCTCAGTTTGTGAGTGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTAGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCGAACAGGTTCAGGAACGATTTGAAGTTCTTAAGAAGCGTAAAGATGTTGGCAGCTTCACAGAGCAAGATCTTGATGAGCGGATTTTAAAACAGCAGCAAGAAGAGGAAGAAAGAAAGCGACTGCGTCGAGAAAAGAAAAAAGAAAAGAAGGAGAAGGCAGTTGAAGAACCTGAAATTGATCCTGATGTTGCTGCCATGATGGGATTTGGAGGTTTCCGGTCATCCAACAAGAAATGA
>Glyma03g39120.1 sequence type=predicted peptide gene model=Glyma03g39120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKGKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKDVGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSNKK* >Glyma03g39120.2 sequence type=predicted peptide gene model=Glyma03g39120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISLNQVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKGKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKDVGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSNKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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