Glyma03g39110 - SoyBase

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Report for Sequence Feature Glyma03g39110

Feature Type:	gene_model
Chromosome:	Gm03
Start:	45314772
stop:	45317318
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g39110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02080	AT	Annotation by Michelle Graham. TAIR10: secretion-associated RAS super family 2 \| chr4:921554-922547 FORWARD LENGTH=193	SoyBase	E_val: 5.00E-135	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007033	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuole organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0077	KOG	Vesicle coat complex COPII, GTPase subunit SAR1	JGI		ISS
PTHR11711	Panther	ARF-RELATED	JGI		ISS
PTHR11711:SF12	Panther	SIMILAR TO ADP-RIBOSYLATION FACTOR 1	JGI		ISS
PF00025	PFAM	ADP-ribosylation factor family	JGI		ISS
UniRef100_B9RNF8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein sar1, putative n=1 Tax=Ricinus communis RepID=B9RNF8_RICCO	SoyBase	E_val: 7.00E-134	ISS
UniRef100_C6SW20	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SW20_SOYBN	SoyBase	E_val: 1.00E-139	ISS

Expression Patterns of Glyma03g39110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g39110 not represented in the dataset	Glyma03g39110 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g39110

Paralog	Evidence	Comments
Glyma19g41670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g39110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g231800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g39110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g39110

Limit To All Plant Sequences

>Glyma03g39110.3   sequence type=transcript   gene model=Glyma03g39110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACGGGTCTGAGACTCGACCCACCTATTAAAATTTGCAAGTTGCAGCAAATAAACGACTCTGATGCGAACGTAACCAGGCTCTGGTTTTGCGGTTAGGGTAGCTCTTTCTACTCAAAACAAAACAAAACATCAATTTCTGTTTCAGTTCGCGGAGATCAATATTTGTCGCTGAGGTCGATCGTCGATAAAAGGCAATGTTTTTGTGGGATTGGTTTTATGGGATTCTAGCGTCGCTTGGCCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACCACCTTGCTTCACATGCTCAAAGATGAGAGATTAGTCCAGCATCAGCCTACCCAATATCCTACATCAGAGGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATCTCGGGGGTCATCAGATTGCTCGAAGAGTTTGGAAAGATTACTATGCCCAGGTGGATGCAGTGGTGTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAAGAGCTGGATGCTCTACTCTCTGATGAATCTTTAGCGAATGTCCCTTTCCTTGTCCTTGGGAATAAGATAGATATTCCATATGCTGCCTCTGAAGAAGAACTGCGTTACCATTTGGGCCTGACTAACTTCACCACAGGCAAGGGTAAGGTAAATTTGTCCGACTCAAATGTTCGTCCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGGGATGGTTTCAAATGGGTTTCCCAGTACATCAAATAGTCCGTTAGCAAGAGATGGCTTGGTATCTGATTTCTAGAGGTTTGTTTTTCTAGTTAAGATTTGGAGGTGTTGTTGGTACGAAATTGCAGTATATTTCAATTTTATTTATATAAAATGACTGGGTTGATTTGTGGTGATTGATGATTTTTTAGGTGAAAATTTGAGGTGGCCCGAATTATTACGCATGCTGAAACTTGTTTTCTACATTTACGTCTGCAACAAAATAAAAGAAGAATTTCTCTTTGCTTAGTATTTGTTTGAGATTTGAGAC

Coding sequences of Glyma03g39110

Limit To All Plant Sequences

>Glyma03g39110.1   sequence type=CDS   gene model=Glyma03g39110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTTGTGGGATTGGTTTTATGGGATTCTAGCGTCGCTTGGCCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACCACCTTGCTTCACATGCTCAAAGATGAGAGATTAGTCCAGCATCAGCCTACCCAATATCCTACATCAGAGGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATCTCGGGGGTCATCAGATTGCTCGAAGAGTTTGGAAAGATTACTATGCCCAGGTGGATGCAGTGGTGTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAAGAGCTGGATGCTCTACTCTCTGATGAATCTTTAGCGAATGTCCCTTTCCTTGTCCTTGGGAATAAGATAGATATTCCATATGCTGCCTCTGAAGAAGAACTGCGTTACCATTTGGGCCTGACTAACTTCACCACAGGCAAGGGTAAGGTAAATTTGTCCGACTCAAATGTTCGTCCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGGGATGGTTTCAAATGGGTTTCCCAGTACATCAAATAG

>Glyma03g39110.3   sequence type=CDS   gene model=Glyma03g39110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTTGTGGGATTGGTTTTATGGGATTCTAGCGTCGCTTGGCCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTGGGCCTCGATAACGCTGGCAAAACCACCTTGCTTCACATGCTCAAAGATGAGAGATTAGTCCAGCATCAGCCTACCCAATATCCTACATCAGAGGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATCTCGGGGGTCATCAGATTGCTCGAAGAGTTTGGAAAGATTACTATGCCCAGGTGGATGCAGTGGTGTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAAGAGCTGGATGCTCTACTCTCTGATGAATCTTTAGCGAATGTCCCTTTCCTTGTCCTTGGGAATAAGATAGATATTCCATATGCTGCCTCTGAAGAAGAACTGCGTTACCATTTGGGCCTGACTAACTTCACCACAGGCAAGGGTAAGGTAAATTTGTCCGACTCAAATGTTCGTCCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGGGATGGTTTCAAATGGGTTTCCCAGTACATCAAATAG

Predicted protein sequences of Glyma03g39110

Limit To All Plant Sequences

>Glyma03g39110.1   sequence type=predicted peptide   gene model=Glyma03g39110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLWDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK*

>Glyma03g39110.3   sequence type=predicted peptide   gene model=Glyma03g39110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLWDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK*

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