SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G61040 | AT | Annotation by Michelle Graham. TAIR10: plus-3 domain-containing protein | chr1:22483817-22485748 FORWARD LENGTH=643 | SoyBase | E_val: 0 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006352 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0051276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome organization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| KOG2402 | KOG | Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein) | JGI | ISS | |
| PTHR13115 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR13115:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF03126 | PFAM | Plus-3 domain | JGI | ISS | |
| UniRef100_B9RZ59 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA polymerase-associated protein RTF1, putative n=1 Tax=Ricinus communis RepID=B9RZ59_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A020 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A020 related cluster n=1 Tax=unknown RepID=UPI000233A020 | SoyBase | E_val: 0 | ISS |
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Glyma03g38980 not represented in the dataset |
Glyma03g38980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g230500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g38980.2 sequence type=CDS gene model=Glyma03g38980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGATTTGGAAAACATGCTTCTTGAGGCAGCTGGAAGGACTAGTTCTCCGGTGAGCAAGCGGCCCAAGCCAAAGAACTCAAAGGCCAAACGTGAGGGTGGTGCTGGTGCAGCATTCTCTGATGGTGGAAGTGACTCCAGAGATGAAAACTCTGATGAGGGTGCAGGCAAGAAACCACAGAGGTATTCATCCCATGTTCCTTTGAAGAAGAGATTGGACATGAACAAAAGAGGTAATAATAATAATGACCGTGGTGGGGCTGAGTTGGAGGATGGAGTTCCTGATCCAGATAGAGATGGTGGCAGCAGTGAAGAATCTGATGTTGGCAGCGATCTCTACAAGGACGAAGACGACAAGCAGAAGCTTGCAAATATGACAGAACTTGAAAGAGAGATGATTTTGTCTGATAGAGCAACCAAGAAATGTGAAAAGGAATTCAAGAAAAAAATGAGAGTGAAGAGGGAAAACAAAAAAGCAAATGCAAAGACTACTACTACTAATACTACTACTGCAAATTCATCTCATCATCCTTCTTCTGTCAAGGTTCGTTCCTCGGCTAGACATGCTGAAAGGACGGCTTCAAAGGGAGACGTACTAAGCGAATTGCGCGCGAAAAGGAAGAAGCAACAAGTCTTAGAACCTCGTGATAAATTGCGAAATGCTTTAGGAACAGGCTCAAGTAGCAAGCAGAAACCCGGAATCACAGCAAGTCCAAGTAGCTCTAGTCAGAGTGAGAGTGCTTTTCGGTCAGACAGCGAAAGAGACTCGTCTGATGATGGTGGATTGGGTGACAGTGATGATGACAAGAGCATGCATGAATCGAAGATGCCAACATTTGAGAACATAAGGGACATCACCATTAGGAGGTCGAAGCTTGTGAAGTGGTTGAATGAACCATTTTTTGATGAGTTAATTGTTGGCTGTTTTGTGAGAATTGGCATAGGGAAGTTAGAAAATGTACCTGTCTATAGGCTCTGCATTGTCCAGAGAGTTGATGGGGGTGACCCAAATAAGCATTACAAGGTAGAGAATAGAGTCACTCACAAGTACCTAGTTTGTGTGTGGGGCAGTGATAACTCTGCTAAAAAGTTTCAGATGGCTGTAGTTTCAGATTCTGCACCATTAGAGAAAGAGTTCAGACAGTGGGTTAGAGAACATGAGAGAACTTGCAGCCAGATGCCAAGTAAGATGAGTGTGTTGGAGAAGAAGGAGGCCATAAGAAGAACTAGCAAGTATGTTTATTCAGCTGCCACAGTGAAGCAGATGCTAGAGGAGAAAAAATCTGTTCCATCTAGGCCACTGAATGTTGCAGTGGAGAAGGATCGGTTGAAGAACCTGTTGGAGGTAGCAAAAAGTAAGAATGATGAGGCAGAGATGGATAGGATCTTGAAAAAGCTTGTGGAATTGGAAGCATCTCGTAGAACCTGGGAGAATGATGCCAAGGCTGTGAGGCTGGCTGAGATGAACAGGAAGAACAGGGTTGAGAACTTCAAGATGTTGTCTGAACAAAAACAGTTCAATACAAATTTGAAGGCTGGAGAGGAAGGCGTTGATCCCTTTTCGAGGAGGTGGACGAGGTCGAGGAATTACTATGGGAAAGAAGCTGAGAAGAATGAAGATAAAAGAGAAAAGGATGGTGAAGTTAGTAAGGTGGGAGAAAAAGAACAAGAAAAAGGAGGTGTTACAACAAAGGTTGGTGTTGAAGTCACAGAATTGGCATTGCAAGCTGCTGCTAATGCAGGGAAGTTGATTGATACCAATGCTCCTGTAGATGGTGGAACAGAATTACATATGCTGCATGATTTTGACTTGCCTATCTCTTTGGCCGAACTCAAGAGTTTTGGTGGACCACAGGGACTCAAAAATGGGTTTCTGGCAAGGAAACAAAAAATAGAAGCAACAGTTGGGCTCCAGGTTTCTGAGAAGGATGGGAGTAGGCATGCTCTTACATTATCTATCAGTGACTACAAGAGAAGAAGAGGACTTCTGTGA
>Glyma03g38980.2 sequence type=predicted peptide gene model=Glyma03g38980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADLENMLLEAAGRTSSPVSKRPKPKNSKAKREGGAGAAFSDGGSDSRDENSDEGAGKKPQRYSSHVPLKKRLDMNKRGNNNNDRGGAELEDGVPDPDRDGGSSEESDVGSDLYKDEDDKQKLANMTELEREMILSDRATKKCEKEFKKKMRVKRENKKANAKTTTTNTTTANSSHHPSSVKVRSSARHAERTASKGDVLSELRAKRKKQQVLEPRDKLRNALGTGSSSKQKPGITASPSSSSQSESAFRSDSERDSSDDGGLGDSDDDKSMHESKMPTFENIRDITIRRSKLVKWLNEPFFDELIVGCFVRIGIGKLENVPVYRLCIVQRVDGGDPNKHYKVENRVTHKYLVCVWGSDNSAKKFQMAVVSDSAPLEKEFRQWVREHERTCSQMPSKMSVLEKKEAIRRTSKYVYSAATVKQMLEEKKSVPSRPLNVAVEKDRLKNLLEVAKSKNDEAEMDRILKKLVELEASRRTWENDAKAVRLAEMNRKNRVENFKMLSEQKQFNTNLKAGEEGVDPFSRRWTRSRNYYGKEAEKNEDKREKDGEVSKVGEKEQEKGGVTTKVGVEVTELALQAAANAGKLIDTNAPVDGGTELHMLHDFDLPISLAELKSFGGPQGLKNGFLARKQKIEATVGLQVSEKDGSRHALTLSISDYKRRRGLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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